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The map label for this gene is yugU [H]

Identifier: 52786998

GI number: 52786998

Start: 3165116

End: 3165517

Strand: Reverse

Name: yugU [H]

Synonym: BLi03300

Alternate gene names: 52786998

Gene position: 3165517-3165116 (Counterclockwise)

Preceding gene: 52786999

Following gene: 52786997

Centisome position: 74.97

GC content: 48.26

Gene sequence:

>402_bases
ATGTTGAAAAAAATACAGATTCAAACAAACCGGCGCGATGAAATGCTTGATATCACAAATGACGTCCAAAGATTCATCTC
AGAAAACGATGTTTCCAGCGGCGCTGTTATCGTCTACTGTCCGCATACGACGGCGGGTATAACGATCAATGAAAATGCCG
ACCCCGATGTCAAACGCGATATGCTGAGAAGATTCGATGAAGTGTATCCGTGGGAACATGAGCTTGACCGCCATATGGAA
GGGAATACAGCGGCGCATTTGAAAGCGAGCACGGTCGGGGCATCGCAGCATATGATTATTGAAGGGGGCAGGCTTGTCCT
CGGGACTTGGCAGGGCATATATTTCTGCGAGTTCGACGGCCCGAGGCACCGGACGTGCTATTTTAAAATTTTAGCCGATT
AA

Upstream 100 bases:

>100_bases
TCATGATGAGACCCTATGAGGCGCGCGTTTATTTGATCAGACAGGAAATCGGCGATTTGTAACGAATTGAGAAAGGGTGC
CAAGAAAGGAGCGGATTCGT

Downstream 100 bases:

>100_bases
AAGGAGGAAATAAAAATGAATCAGTTCATGGAACGCCTCTCTTTGTCAAAGCCTGTGGTCCAGGCGCCGATGGCGGGCGG
GCCGACAACACCAAGGCTCG

Product: YugU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MLKKIQIQTNRRDEMLDITNDVQRFISENDVSSGAVIVYCPHTTAGITINENADPDVKRDMLRRFDEVYPWEHELDRHME
GNTAAHLKASTVGASQHMIIEGGRLVLGTWQGIYFCEFDGPRHRTCYFKILAD

Sequences:

>Translated_133_residues
MLKKIQIQTNRRDEMLDITNDVQRFISENDVSSGAVIVYCPHTTAGITINENADPDVKRDMLRRFDEVYPWEHELDRHME
GNTAAHLKASTVGASQHMIIEGGRLVLGTWQGIYFCEFDGPRHRTCYFKILAD
>Mature_133_residues
MLKKIQIQTNRRDEMLDITNDVQRFISENDVSSGAVIVYCPHTTAGITINENADPDVKRDMLRRFDEVYPWEHELDRHME
GNTAAHLKASTVGASQHMIIEGGRLVLGTWQGIYFCEFDGPRHRTCYFKILAD

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=107, Percent_Identity=35.5140186915888, Blast_Score=65, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221476589, Length=118, Percent_Identity=33.8983050847458, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221476594, Length=118, Percent_Identity=33.8983050847458, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 15282; Mature: 15282

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKIQIQTNRRDEMLDITNDVQRFISENDVSSGAVIVYCPHTTAGITINENADPDVKRD
CCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEECCCCCCHHHHH
MLRRFDEVYPWEHELDRHMEGNTAAHLKASTVGASQHMIIEGGRLVLGTWQGIYFCEFDG
HHHHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCEEEEEECCEEEEEECCC
PRHRTCYFKILAD
CCCCEEEEEEEEC
>Mature Secondary Structure
MLKKIQIQTNRRDEMLDITNDVQRFISENDVSSGAVIVYCPHTTAGITINENADPDVKRD
CCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEECCCCCCHHHHH
MLRRFDEVYPWEHELDRHMEGNTAAHLKASTVGASQHMIIEGGRLVLGTWQGIYFCEFDG
HHHHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCEEEEEECCEEEEEECCC
PRHRTCYFKILAD
CCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]