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The map label for this gene is rapD [H]

Identifier: 52786961

GI number: 52786961

Start: 3128039

End: 3129151

Strand: Direct

Name: rapD [H]

Synonym: BLi03261

Alternate gene names: 52786961

Gene position: 3128039-3129151 (Clockwise)

Preceding gene: 52786958

Following gene: 52786962

Centisome position: 74.08

GC content: 36.3

Gene sequence:

>1113_bases
ATGGCCAAAGCCGTGGCTTCTCAAGAAGTCGCCAATATGCTGAACGACTGGTACATACTGATGAAAAAACGAGACATTTC
AGGTTCAATCGAAATGAAAGATGACATAGATAAAGCAATTGAAAAGATGGAAGAAGATCATGACGTTCTTCTCTATTATC
AAATGCTGGATTTTCGCTTAAGGCTTCTTCTTGAAGATATCTCCCAATCTTCCACAGAAAAATTGGAAGCCATCAGTTTT
AAGGACAAAGATCCAAAAAGTACGGACGATAAGCTGAATTATTATTTTTATCTGTTCAAAGGGATTTATGAAGACTACAA
GCAAAACCATACAGAAGCGCTTAATTTTTTCAGAATAGCGGAAAAAAGGCTGAGCGTCATTCAAAATGAAATTGAAAAAG
CCGAATTTCATTATAAAATCGGTGTTTTGTATTACAACTTAAAAGCGACATGGCTGTCGATTCACCACATCAACATTGCC
TCAGGCATCTTCCAAGGGTATGACGGGTATGCCAAGCGGGTCATCAACTGCAAAATGCTGATCGGGCTCAATTATATTGA
CCAATTTAAGTTTGCCGAAAGTGAAGTATTGTTAAAGGAAGCAATTGAAAAAACCGAAAAAATCGGCGACCAATATCTTT
TGCCTTATACCTACTATAATATGGGCTTTTTGAAGAGTAAGGAAGATAAACACGAAGAAGCGCTGAAGTATTATAATAAA
GCTTTTGCAATCAAAGACTTTGAAACGAAAGCCAAGTATGCTTACCTTCTATGTGTATATGAAAACACAAGGTCTCTTTT
CAAAACCAACGATCCCGACCAAGCTTTTAAATGGATCGACACAGGCTTTAAAAAAGCTCAAGAAGTGAATAGCGAAATTT
TCGAATTAAAATTCAAAACTTTATATACATTACATTCCGATTGTCAGAATAAACTGGAAGTAATCAAGGACTTTATTCAC
CAATTAGAAGATAAAAAAGCATGGGTTGATCTGGAGGAATTGCTGATGGACGTAGCGAATTACTATAGGGAAAATAAGTT
ATACGAAGAAGCCATATATTTCTACATTAAAACAGACAAGGCAAGTAAACTTGCCGGAAGAGGAGGAGAATAG

Upstream 100 bases:

>100_bases
CAAACATGCATTTCCGTGTTATTCACAGACGGCGGCAGTTTATGCTATGATTAATAGAACTTCAATTTACAAAAAATTCA
CAAAGATTGGAGGGAAAAGA

Downstream 100 bases:

>100_bases
GATGAAAAAAGTGTTGTTAGCTGTATTTGTATTAGGCACTGTTTTCAGCTTTTCGTTTGCAAATCACGCTCCTGAAGCGG
CTTCCCAAAGCAATGAGATA

Product: RapD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MAKAVASQEVANMLNDWYILMKKRDISGSIEMKDDIDKAIEKMEEDHDVLLYYQMLDFRLRLLLEDISQSSTEKLEAISF
KDKDPKSTDDKLNYYFYLFKGIYEDYKQNHTEALNFFRIAEKRLSVIQNEIEKAEFHYKIGVLYYNLKATWLSIHHINIA
SGIFQGYDGYAKRVINCKMLIGLNYIDQFKFAESEVLLKEAIEKTEKIGDQYLLPYTYYNMGFLKSKEDKHEEALKYYNK
AFAIKDFETKAKYAYLLCVYENTRSLFKTNDPDQAFKWIDTGFKKAQEVNSEIFELKFKTLYTLHSDCQNKLEVIKDFIH
QLEDKKAWVDLEELLMDVANYYRENKLYEEAIYFYIKTDKASKLAGRGGE

Sequences:

>Translated_370_residues
MAKAVASQEVANMLNDWYILMKKRDISGSIEMKDDIDKAIEKMEEDHDVLLYYQMLDFRLRLLLEDISQSSTEKLEAISF
KDKDPKSTDDKLNYYFYLFKGIYEDYKQNHTEALNFFRIAEKRLSVIQNEIEKAEFHYKIGVLYYNLKATWLSIHHINIA
SGIFQGYDGYAKRVINCKMLIGLNYIDQFKFAESEVLLKEAIEKTEKIGDQYLLPYTYYNMGFLKSKEDKHEEALKYYNK
AFAIKDFETKAKYAYLLCVYENTRSLFKTNDPDQAFKWIDTGFKKAQEVNSEIFELKFKTLYTLHSDCQNKLEVIKDFIH
QLEDKKAWVDLEELLMDVANYYRENKLYEEAIYFYIKTDKASKLAGRGGE
>Mature_369_residues
AKAVASQEVANMLNDWYILMKKRDISGSIEMKDDIDKAIEKMEEDHDVLLYYQMLDFRLRLLLEDISQSSTEKLEAISFK
DKDPKSTDDKLNYYFYLFKGIYEDYKQNHTEALNFFRIAEKRLSVIQNEIEKAEFHYKIGVLYYNLKATWLSIHHINIAS
GIFQGYDGYAKRVINCKMLIGLNYIDQFKFAESEVLLKEAIEKTEKIGDQYLLPYTYYNMGFLKSKEDKHEEALKYYNKA
FAIKDFETKAKYAYLLCVYENTRSLFKTNDPDQAFKWIDTGFKKAQEVNSEIFELKFKTLYTLHSDCQNKLEVIKDFIHQ
LEDKKAWVDLEELLMDVANYYRENKLYEEAIYFYIKTDKASKLAGRGGE

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43867; Mature: 43735

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAVASQEVANMLNDWYILMKKRDISGSIEMKDDIDKAIEKMEEDHDVLLYYQMLDFRL
CCCHHHHHHHHHHHHHHEEEEEECCCCCCCEEHHHHHHHHHHHCCCCCEEEHHHHHHHHH
RLLLEDISQSSTEKLEAISFKDKDPKSTDDKLNYYFYLFKGIYEDYKQNHTEALNFFRIA
HHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
EKRLSVIQNEIEKAEFHYKIGVLYYNLKATWLSIHHINIASGIFQGYDGYAKRVINCKML
HHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEEEEEEEEHHHHHHHCCCHHHHHHHHHHEE
IGLNYIDQFKFAESEVLLKEAIEKTEKIGDQYLLPYTYYNMGFLKSKEDKHEEALKYYNK
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEECCCCCCCCCHHHHHHHHHHHH
AFAIKDFETKAKYAYLLCVYENTRSLFKTNDPDQAFKWIDTGFKKAQEVNSEIFELKFKT
HHEEECCCCCCCEEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYTLHSDCQNKLEVIKDFIHQLEDKKAWVDLEELLMDVANYYRENKLYEEAIYFYIKTDK
HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
ASKLAGRGGE
HHHCCCCCCC
>Mature Secondary Structure 
AKAVASQEVANMLNDWYILMKKRDISGSIEMKDDIDKAIEKMEEDHDVLLYYQMLDFRL
CCHHHHHHHHHHHHHHEEEEEECCCCCCCEEHHHHHHHHHHHCCCCCEEEHHHHHHHHH
RLLLEDISQSSTEKLEAISFKDKDPKSTDDKLNYYFYLFKGIYEDYKQNHTEALNFFRIA
HHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
EKRLSVIQNEIEKAEFHYKIGVLYYNLKATWLSIHHINIASGIFQGYDGYAKRVINCKML
HHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEEEEEEEEHHHHHHHCCCHHHHHHHHHHEE
IGLNYIDQFKFAESEVLLKEAIEKTEKIGDQYLLPYTYYNMGFLKSKEDKHEEALKYYNK
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEECCCCCCCCCHHHHHHHHHHHH
AFAIKDFETKAKYAYLLCVYENTRSLFKTNDPDQAFKWIDTGFKKAQEVNSEIFELKFKT
HHEEECCCCCCCEEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYTLHSDCQNKLEVIKDFIHQLEDKKAWVDLEELLMDVANYYRENKLYEEAIYFYIKTDK
HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
ASKLAGRGGE
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]