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The map label for this gene is ytlP [H]

Identifier: 52786872

GI number: 52786872

Start: 3029347

End: 3029952

Strand: Reverse

Name: ytlP [H]

Synonym: BLi03147

Alternate gene names: 52786872

Gene position: 3029952-3029347 (Counterclockwise)

Preceding gene: 52786874

Following gene: 52786871

Centisome position: 71.75

GC content: 51.16

Gene sequence:

>606_bases
ATGTCAGTCAAACCGCATTACTTTATTGGAATTCCAATTCCGGCGGAGCTTAGTGATCCGCTTTATCAAACGGTCAGCAG
CCGTCCGGAATTTTCTTTTCATAGATGGGTGCATCCTTTGGACTACCACATCACCCTCGTGTTCCTCGGCTCTGCTGAAA
AGGAGCAGCTGGCGATGCTTGCTGGCAGCCTCAAGCTGATCTCCGATGAGACGGCTCCGTTTCAGCTTGCGATAAAACGT
TTCGGAACCTTCGGAAAGCCGTCGGAGCCGAGAATTCTTCATGTGGAACCGGAATACTCAGCCGCTCTCTTTCATGTGAG
GGAACAGGTGAAGCATGCAGCGGATGCGGCGGGCTTTGAAATTGAAAAACGGCCTTTTCATCCACATGTGACGGTCGCCA
GAAAGTGGAATGGATCGGCCTCTTTTAACGGACGCCTGGAGCCGCTTGAAGACGCGGTGTCTTTTACGGCCCGGCATTTC
ACCATCTTTCAAACCCATTTAGACAGGCTTCCCAAATACGAGCATCAAGCCGTTTTCCATTTCGGCGAACGGCCGGCTGC
AGAAAAGCAAGATTCGGAGATGAACGCAGATGGCACAGATTATTAA

Upstream 100 bases:

>100_bases
TATCCTATCATAAGCCCTTGGAAAGTGGAAAATAGAGAGGTTATAAGTCCATATTTTTTGTTAAAATATAGAGAAGACGA
ATGAGGAGGAAGCCATACAT

Downstream 100 bases:

>100_bases
AATACAGGACTGTATTTCAAGGTATGAACAAGATCCTTATCATTATATCAACCAGTTTATCCGCTTGAAAAAGCAGCGCT
GGCAGTCAATTAAAGAGATG

Product: YtlP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSVKPHYFIGIPIPAELSDPLYQTVSSRPEFSFHRWVHPLDYHITLVFLGSAEKEQLAMLAGSLKLISDETAPFQLAIKR
FGTFGKPSEPRILHVEPEYSAALFHVREQVKHAADAAGFEIEKRPFHPHVTVARKWNGSASFNGRLEPLEDAVSFTARHF
TIFQTHLDRLPKYEHQAVFHFGERPAAEKQDSEMNADGTDY

Sequences:

>Translated_201_residues
MSVKPHYFIGIPIPAELSDPLYQTVSSRPEFSFHRWVHPLDYHITLVFLGSAEKEQLAMLAGSLKLISDETAPFQLAIKR
FGTFGKPSEPRILHVEPEYSAALFHVREQVKHAADAAGFEIEKRPFHPHVTVARKWNGSASFNGRLEPLEDAVSFTARHF
TIFQTHLDRLPKYEHQAVFHFGERPAAEKQDSEMNADGTDY
>Mature_200_residues
SVKPHYFIGIPIPAELSDPLYQTVSSRPEFSFHRWVHPLDYHITLVFLGSAEKEQLAMLAGSLKLISDETAPFQLAIKRF
GTFGKPSEPRILHVEPEYSAALFHVREQVKHAADAAGFEIEKRPFHPHVTVARKWNGSASFNGRLEPLEDAVSFTARHFT
IFQTHLDRLPKYEHQAVFHFGERPAAEKQDSEMNADGTDY

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: 6.5.1.- [C]

Molecular weight: Translated: 22868; Mature: 22737

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKPHYFIGIPIPAELSDPLYQTVSSRPEFSFHRWVHPLDYHITLVFLGSAEKEQLAML
CCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCHHHCCCCCCEEEEEEEECCCCHHHHHHH
AGSLKLISDETAPFQLAIKRFGTFGKPSEPRILHVEPEYSAALFHVREQVKHAADAAGFE
HCCCEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCE
IEKRPFHPHVTVARKWNGSASFNGRLEPLEDAVSFTARHFTIFQTHLDRLPKYEHQAVFH
EECCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEE
FGERPAAEKQDSEMNADGTDY
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVKPHYFIGIPIPAELSDPLYQTVSSRPEFSFHRWVHPLDYHITLVFLGSAEKEQLAML
CCCCCEEEEECCCCCCCCHHHHHHHCCCCCCHHHCCCCCCEEEEEEEECCCCHHHHHHH
AGSLKLISDETAPFQLAIKRFGTFGKPSEPRILHVEPEYSAALFHVREQVKHAADAAGFE
HCCCEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCE
IEKRPFHPHVTVARKWNGSASFNGRLEPLEDAVSFTARHFTIFQTHLDRLPKYEHQAVFH
EECCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEE
FGERPAAEKQDSEMNADGTDY
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]