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The map label for this gene is ytxE [H]

Identifier: 52786848

GI number: 52786848

Start: 3005675

End: 3006364

Strand: Reverse

Name: ytxE [H]

Synonym: BLi03123

Alternate gene names: 52786848

Gene position: 3006364-3005675 (Counterclockwise)

Preceding gene: 52786849

Following gene: 52786844

Centisome position: 71.2

GC content: 47.68

Gene sequence:

>690_bases
ATGAAGCTTAGACATGAACGAAGGAAGCGCGAGCAGGGCCGCAAATCGCCAAACTGGATCATCACGTTTTCGGATTTGAT
TACGCTCATCCTCGTGTTCTTTATTTTACTGTTTTCGATGTCGCAAATCGATTTAAACAAATTCAAAGCAGCAGTCGGTT
CATTTCAAGACAGGGCCGACGGCAAATCCGCCGCAGAGTTGAAAAAAGACGCGGGCGATCAGAAGGCTGAAAAAACGGCT
AAAAGCCAAGATGATTTATTAAAGAAAATCAATGACTATATTGAAAAAAACGAACTGTCAAGTTTGATTGCGGCCAAGCG
TGACGAACGGGGCGTCATTCTCGTCCTTCAGGAAGCGGTTTTGTTTGATTCAGGGAAAGCGGATCTGAAAGACCAAGCTC
ACCCGCTTTTGCATAAAATCGCCGTCCTTCTCAAATCGGTGTCCAACCCGATTCGTGTGGAGGGGCATACGGACAGCCGC
CCGATTTCGACTTACCGTTTTCCATCCAATTGGGAGCTTTCTGCAGCAAGGGCGAGCACTGTGATCGGCTACTTTACGTC
GAAGGAAAAGCTCGACTCGTCGCGTTTTCTTGCCATCGGTTATGCGGATACAAAACCGGTCAGGGACAACCGCACTGAGA
GCCATATGAAGGAAAACAGGCGCGTCGAGATTGTCATCGCAAAACAATAA

Upstream 100 bases:

>100_bases
AGAAATCCGCGAAATCTTGAAAGTCAGCTTGTCGTTTTCAGTTCAAAAGAAGAATGGACAAAAAAGCGGGCGGACCGCAT
GAAACAAAAGGACAGGCCTC

Downstream 100 bases:

>100_bases
TGAGAAGAAAGCAAGGTCTTGCACAAAAGCAAGGCCTTTTCTGTGTGCCGCAATTTTCATATTAAGTGGTACGCTGGGCA
GAGCGAATCGGATAAAGGGC

Product: flagellar motor protein MotS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKLRHERRKREQGRKSPNWIITFSDLITLILVFFILLFSMSQIDLNKFKAAVGSFQDRADGKSAAELKKDAGDQKAEKTA
KSQDDLLKKINDYIEKNELSSLIAAKRDERGVILVLQEAVLFDSGKADLKDQAHPLLHKIAVLLKSVSNPIRVEGHTDSR
PISTYRFPSNWELSAARASTVIGYFTSKEKLDSSRFLAIGYADTKPVRDNRTESHMKENRRVEIVIAKQ

Sequences:

>Translated_229_residues
MKLRHERRKREQGRKSPNWIITFSDLITLILVFFILLFSMSQIDLNKFKAAVGSFQDRADGKSAAELKKDAGDQKAEKTA
KSQDDLLKKINDYIEKNELSSLIAAKRDERGVILVLQEAVLFDSGKADLKDQAHPLLHKIAVLLKSVSNPIRVEGHTDSR
PISTYRFPSNWELSAARASTVIGYFTSKEKLDSSRFLAIGYADTKPVRDNRTESHMKENRRVEIVIAKQ
>Mature_229_residues
MKLRHERRKREQGRKSPNWIITFSDLITLILVFFILLFSMSQIDLNKFKAAVGSFQDRADGKSAAELKKDAGDQKAEKTA
KSQDDLLKKINDYIEKNELSSLIAAKRDERGVILVLQEAVLFDSGKADLKDQAHPLLHKIAVLLKSVSNPIRVEGHTDSR
PISTYRFPSNWELSAARASTVIGYFTSKEKLDSSRFLAIGYADTKPVRDNRTESHMKENRRVEIVIAKQ

Specific function: May be involved in some transport function [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 26000; Mature: 26000

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRHERRKREQGRKSPNWIITFSDLITLILVFFILLFSMSQIDLNKFKAAVGSFQDRAD
CCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GKSAAELKKDAGDQKAEKTAKSQDDLLKKINDYIEKNELSSLIAAKRDERGVILVLQEAV
CHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
LFDSGKADLKDQAHPLLHKIAVLLKSVSNPIRVEGHTDSRPISTYRFPSNWELSAARAST
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEECCCCCCCHHHHHHH
VIGYFTSKEKLDSSRFLAIGYADTKPVRDNRTESHMKENRRVEIVIAKQ
HHHHHCCHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCEEEEEEECC
>Mature Secondary Structure
MKLRHERRKREQGRKSPNWIITFSDLITLILVFFILLFSMSQIDLNKFKAAVGSFQDRAD
CCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GKSAAELKKDAGDQKAEKTAKSQDDLLKKINDYIEKNELSSLIAAKRDERGVILVLQEAV
CHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
LFDSGKADLKDQAHPLLHKIAVLLKSVSNPIRVEGHTDSRPISTYRFPSNWELSAARAST
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEECCCCCCCHHHHHHH
VIGYFTSKEKLDSSRFLAIGYADTKPVRDNRTESHMKENRRVEIVIAKQ
HHHHHCCHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934817; 9387221; 9384377 [H]