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The map label for this gene is yddR [H]

Identifier: 52786840

GI number: 52786840

Start: 2998034

End: 2998804

Strand: Reverse

Name: yddR [H]

Synonym: BLi03115

Alternate gene names: 52786840

Gene position: 2998804-2998034 (Counterclockwise)

Preceding gene: 52786842

Following gene: 52786839

Centisome position: 71.02

GC content: 44.49

Gene sequence:

>771_bases
ATGATAACTATGAATATTCAACAAATTCGAAATGCAACATTGGCCGTCAAATATGCGGGCAAAACATTTTTAATAGATCC
GATGCTGGCTGAAAAAGGCGCTTACCCTCCTTTCCCGAACTCAGCAAGACAAGAGCAAAACAACCCTTTGGTCAGCCTGC
CTGTGCCAACCGACGAGCTCGTCAAGAATACAGACGCAGTCATCGTCACTCATCTGCATTTAGATCATTTTGACGATGCT
GCCAAAGATCTGCTTCCGAAAGAAATCAAACTGTTTGTCCAAAATGAAGCAGATGCTGAGGAAGTGAGAAAAGCCGGTTT
TCAAAATATAGAGGTCTTAACAAAAGATACGGTGTTTGAGGGGATTCAATTAATCAAAACAAAAGGCGAGCATGGGAGGG
GAGAGATATTAAAGCTTGCCGGAGAAGTGTGCGGCGTTGTCTTCAAACACTCAAAGGAGAAAACGCTGTATGTGGCAGGG
GATACAGTTTGGTATGAAGGTGTCCGGGAAGAAATCGCTGCGCATCAGCCGGACGTCATAGTCGTTAACGGAGGAGACAA
TCAGTTCTTTGAAGGAGGGTCTCTTGTGATGGGAAAAGAGGATATTGCTGAAGTCTATCAAGCTGCACCTAAGGCCACAA
TCATTTCCAGTCATATGGAGGCTGTCAACCATTGGACTTTATCACGAAAAGAATTGAAGAGCTTCATTCAGGAAAAAGGA
ATGTCCTCGCGCGTACTTGTGCCGGATGACGGCGAATCTTACACATTTTAA

Upstream 100 bases:

>100_bases
CGTTTTTCAAAAATCAAGTCAAACGCTGTAAAGACTTGATTTTATCTATTTAAATGTTGATCGGTCATAGTATAAACTAA
TCGTAAATGAAAGGAAAGGC

Downstream 100 bases:

>100_bases
TATATGACAGGTCAAAGCCGTAAAAAACAGACAGTGAACTTCTGTCTGTTTTTTAATTCTTCTTCGAGACCAGAGATGTA
ATCAATGCCTCCGGCGGGAT

Product: YddR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MITMNIQQIRNATLAVKYAGKTFLIDPMLAEKGAYPPFPNSARQEQNNPLVSLPVPTDELVKNTDAVIVTHLHLDHFDDA
AKDLLPKEIKLFVQNEADAEEVRKAGFQNIEVLTKDTVFEGIQLIKTKGEHGRGEILKLAGEVCGVVFKHSKEKTLYVAG
DTVWYEGVREEIAAHQPDVIVVNGGDNQFFEGGSLVMGKEDIAEVYQAAPKATIISSHMEAVNHWTLSRKELKSFIQEKG
MSSRVLVPDDGESYTF

Sequences:

>Translated_256_residues
MITMNIQQIRNATLAVKYAGKTFLIDPMLAEKGAYPPFPNSARQEQNNPLVSLPVPTDELVKNTDAVIVTHLHLDHFDDA
AKDLLPKEIKLFVQNEADAEEVRKAGFQNIEVLTKDTVFEGIQLIKTKGEHGRGEILKLAGEVCGVVFKHSKEKTLYVAG
DTVWYEGVREEIAAHQPDVIVVNGGDNQFFEGGSLVMGKEDIAEVYQAAPKATIISSHMEAVNHWTLSRKELKSFIQEKG
MSSRVLVPDDGESYTF
>Mature_256_residues
MITMNIQQIRNATLAVKYAGKTFLIDPMLAEKGAYPPFPNSARQEQNNPLVSLPVPTDELVKNTDAVIVTHLHLDHFDDA
AKDLLPKEIKLFVQNEADAEEVRKAGFQNIEVLTKDTVFEGIQLIKTKGEHGRGEILKLAGEVCGVVFKHSKEKTLYVAG
DTVWYEGVREEIAAHQPDVIVVNGGDNQFFEGGSLVMGKEDIAEVYQAAPKATIISSHMEAVNHWTLSRKELKSFIQEKG
MSSRVLVPDDGESYTF

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 28408; Mature: 28408

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITMNIQQIRNATLAVKYAGKTFLIDPMLAEKGAYPPFPNSARQEQNNPLVSLPVPTDEL
CEECCHHHHCCCEEEEEECCCEEEECCHHHHCCCCCCCCCCHHHHCCCCEEEECCCHHHH
VKNTDAVIVTHLHLDHFDDAAKDLLPKEIKLFVQNEADAEEVRKAGFQNIEVLTKDTVFE
HCCCCEEEEEEEECCHHHHHHHHHCHHHHHEEECCCCCHHHHHHCCCCCEEEEEHHHHHH
GIQLIKTKGEHGRGEILKLAGEVCGVVFKHSKEKTLYVAGDTVWYEGVREEIAAHQPDVI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCEE
VVNGGDNQFFEGGSLVMGKEDIAEVYQAAPKATIISSHMEAVNHWTLSRKELKSFIQEKG
EEECCCCCEECCCCEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
MSSRVLVPDDGESYTF
CCCEEEECCCCCCCCC
>Mature Secondary Structure
MITMNIQQIRNATLAVKYAGKTFLIDPMLAEKGAYPPFPNSARQEQNNPLVSLPVPTDEL
CEECCHHHHCCCEEEEEECCCEEEECCHHHHCCCCCCCCCCHHHHCCCCEEEECCCHHHH
VKNTDAVIVTHLHLDHFDDAAKDLLPKEIKLFVQNEADAEEVRKAGFQNIEVLTKDTVFE
HCCCCEEEEEEEECCHHHHHHHHHCHHHHHEEECCCCCHHHHHHCCCCCEEEEEHHHHHH
GIQLIKTKGEHGRGEILKLAGEVCGVVFKHSKEKTLYVAGDTVWYEGVREEIAAHQPDVI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCEE
VVNGGDNQFFEGGSLVMGKEDIAEVYQAAPKATIISSHMEAVNHWTLSRKELKSFIQEKG
EEECCCCCEECCCCEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
MSSRVLVPDDGESYTF
CCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]