Click here to switch to the map view.

The map label for this gene is padR [H]

Identifier: 52786807

GI number: 52786807

Start: 2966538

End: 2967095

Strand: Reverse

Name: padR [H]

Synonym: BLi03079

Alternate gene names: 52786807

Gene position: 2967095-2966538 (Counterclockwise)

Preceding gene: 52786808

Following gene: 52786806

Centisome position: 70.27

GC content: 44.8

Gene sequence:

>558_bases
ATGAGGGTATTGAAATACGCGATTTTGGGGCTCCTTGATCATGGGAGTTTGAGCGGCTACGATATGACAAGCCGGTTTAA
AGCCGAATTGGGCCAATTTTGGAGCGCCAAGCACAGCCAGATTTATCCCGAGCTGAAAAAGCTGACGGATGAAGGATTTA
TCGAATTTGAAACGGTGATCCAAGGCTCAAAATTAGAAAAGAAAATGTATTCCATCACAGAAGCCGGAAAGCGTGAACTT
CACGGGTGGCTTACGGAATTTAAGCCGGTTCCAGATACGGTAAAAGATGAATTTATGCTGAAAGCTTATTTTATCTCTTC
GATGGAACCTGATGAAGCGAAAAGGCTTTTTAACGATCAGCTTCAAAAGAGACAGGAAAAAGCTGCTTTTTTAAACACCA
AGCTCGATGAATTGAAGCGCGAAGCGGGTGATTCAATAACGTTCCGCTCGCCTCATTTCGGCCATTACCTTGTATTGACC
CGGGCGCTTGAGCGGGAAAAAGGCTATTGCTCATGGCTTGAAAAAGCGCTTCTCCTGATGGAGGATGATAAGGCTTAG

Upstream 100 bases:

>100_bases
CCGAATCCGGGTCCTTTTTTCGGTTGAACCGGTTATGCGCCTATCAAAACATGTCCACCATGATATAATGTAGGAATCGG
ATTCATCTTGGAGGGTGATT

Downstream 100 bases:

>100_bases
GCGGGCATGATGTTGTGAAGGCGGATTGCGGTTCAATCGCACAACGATTTATAATAAATATATCTAGCAGTCAGAGGATG
AAGGTGAAACGATTGGCGAC

Product: PadR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRVLKYAILGLLDHGSLSGYDMTSRFKAELGQFWSAKHSQIYPELKKLTDEGFIEFETVIQGSKLEKKMYSITEAGKREL
HGWLTEFKPVPDTVKDEFMLKAYFISSMEPDEAKRLFNDQLQKRQEKAAFLNTKLDELKREAGDSITFRSPHFGHYLVLT
RALEREKGYCSWLEKALLLMEDDKA

Sequences:

>Translated_185_residues
MRVLKYAILGLLDHGSLSGYDMTSRFKAELGQFWSAKHSQIYPELKKLTDEGFIEFETVIQGSKLEKKMYSITEAGKREL
HGWLTEFKPVPDTVKDEFMLKAYFISSMEPDEAKRLFNDQLQKRQEKAAFLNTKLDELKREAGDSITFRSPHFGHYLVLT
RALEREKGYCSWLEKALLLMEDDKA
>Mature_185_residues
MRVLKYAILGLLDHGSLSGYDMTSRFKAELGQFWSAKHSQIYPELKKLTDEGFIEFETVIQGSKLEKKMYSITEAGKREL
HGWLTEFKPVPDTVKDEFMLKAYFISSMEPDEAKRLFNDQLQKRQEKAAFLNTKLDELKREAGDSITFRSPHFGHYLVLT
RALEREKGYCSWLEKALLLMEDDKA

Specific function: Negative transcriptional regulator of padC phenolic acid decarboxylase [H]

COG id: COG1695

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018309
- InterPro:   IPR005149
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03551 PadR; PF10400 Vir_act_alpha_C [H]

EC number: NA

Molecular weight: Translated: 21524; Mature: 21524

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLKYAILGLLDHGSLSGYDMTSRFKAELGQFWSAKHSQIYPELKKLTDEGFIEFETVI
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
QGSKLEKKMYSITEAGKRELHGWLTEFKPVPDTVKDEFMLKAYFISSMEPDEAKRLFNDQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LQKRQEKAAFLNTKLDELKREAGDSITFRSPHFGHYLVLTRALEREKGYCSWLEKALLLM
HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
EDDKA
CCCCC
>Mature Secondary Structure
MRVLKYAILGLLDHGSLSGYDMTSRFKAELGQFWSAKHSQIYPELKKLTDEGFIEFETVI
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
QGSKLEKKMYSITEAGKRELHGWLTEFKPVPDTVKDEFMLKAYFISSMEPDEAKRLFNDQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LQKRQEKAAFLNTKLDELKREAGDSITFRSPHFGHYLVLTRALEREKGYCSWLEKALLLM
HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
EDDKA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]