Click here to switch to the map view.

The map label for this gene is ysdB [H]

Identifier: 52786761

GI number: 52786761

Start: 2917990

End: 2918391

Strand: Direct

Name: ysdB [H]

Synonym: BLi03031

Alternate gene names: 52786761

Gene position: 2917990-2918391 (Clockwise)

Preceding gene: 52786748

Following gene: 52786768

Centisome position: 69.1

GC content: 42.04

Gene sequence:

>402_bases
ATGATTGTCATCATATTGAGACTGGCTTTGCTGGCGCTTTTGGTCTACGTCGTGTACAGGGCCGTTCAATTTTTGGGGAG
CCCGGACAGAAGGCTGAAATCAGCACAGGCAAAAAAGCACTTTTATGTTTTGGACGAACAAAAGAATACACGCAAAAATC
TCAAGCTGACATTTAAAGGCGTGCTTTTCGAAGGAGAAAAACACATTCCTTCAAAAGACCATCCGCTGTTCATCCATACG
ATTTTTGTATGGACGGAAGCGCCTGAAGAAAAGCTCAGCTCTTTTACGGAAGAAGACTTCGCGGAACTTGAAGAAAATAT
TAAAGAGCACTATCCCGATTGCAAAATCGACTGGGATTCGAACATCCAAAAGTGGAAAAACAAAAAAGCAGAAGAGCAAT
AA

Upstream 100 bases:

>100_bases
GTTTACAGCTTTTTTGGTTAAAAAATGAAACCTTGCGGGAACTGGTTCGTATATATTGGGATATACTCAAAATTACTTTC
AAGGGAGGTTCTGTTTTAAC

Downstream 100 bases:

>100_bases
AGCCTCGTCTGCTTTTTTAATTCATCATATAAAAGCCGGTCAAAACAGCTTGCACGCCGAGCAAAAAAGGAATGCCGAGC
CTGAAGGAAAGGTGTTTTGT

Product: YsdB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MIVIILRLALLALLVYVVYRAVQFLGSPDRRLKSAQAKKHFYVLDEQKNTRKNLKLTFKGVLFEGEKHIPSKDHPLFIHT
IFVWTEAPEEKLSSFTEEDFAELEENIKEHYPDCKIDWDSNIQKWKNKKAEEQ

Sequences:

>Translated_133_residues
MIVIILRLALLALLVYVVYRAVQFLGSPDRRLKSAQAKKHFYVLDEQKNTRKNLKLTFKGVLFEGEKHIPSKDHPLFIHT
IFVWTEAPEEKLSSFTEEDFAELEENIKEHYPDCKIDWDSNIQKWKNKKAEEQ
>Mature_133_residues
MIVIILRLALLALLVYVVYRAVQFLGSPDRRLKSAQAKKHFYVLDEQKNTRKNLKLTFKGVLFEGEKHIPSKDHPLFIHT
IFVWTEAPEEKLSSFTEEDFAELEENIKEHYPDCKIDWDSNIQKWKNKKAEEQ

Specific function: May mediate a negative feedback loop that down-regulates the expression of the sigma-W regulon following the activation of sigma-W in response to conditions of cell envelope stress. Might interact with and inhibit the activity of the protease prsW, or cou

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15745; Mature: 15745

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVIILRLALLALLVYVVYRAVQFLGSPDRRLKSAQAKKHFYVLDEQKNTRKNLKLTFKG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEECCCCCCCCCEEEEEEE
VLFEGEKHIPSKDHPLFIHTIFVWTEAPEEKLSSFTEEDFAELEENIKEHYPDCKIDWDS
EEEECCCCCCCCCCCEEEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEECCCC
NIQKWKNKKAEEQ
CHHHHHCCCCCCC
>Mature Secondary Structure
MIVIILRLALLALLVYVVYRAVQFLGSPDRRLKSAQAKKHFYVLDEQKNTRKNLKLTFKG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEECCCCCCCCCEEEEEEE
VLFEGEKHIPSKDHPLFIHTIFVWTEAPEEKLSSFTEEDFAELEENIKEHYPDCKIDWDS
EEEECCCCCCCCCCCEEEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEECCCC
NIQKWKNKKAEEQ
CHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377; 12207695 [H]