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The map label for this gene is yodT [H]

Identifier: 52786043

GI number: 52786043

Start: 2252603

End: 2253943

Strand: Reverse

Name: yodT [H]

Synonym: BLi02299

Alternate gene names: 52786043

Gene position: 2253943-2252603 (Counterclockwise)

Preceding gene: 52786044

Following gene: 52786042

Centisome position: 53.38

GC content: 50.34

Gene sequence:

>1341_bases
ATGTCGTTTTTGATTAAGCCGGATCTGCACGCAAGCTATCCGGTCGTTCAGTATGCAAAAGGAAGCTGGATTGTCGACCA
TTCCGGAAAGCGTTACCTTGACGGTTGTTCGGGGGCTGTTACCTGCAATCTCGGGCACGGTGTCCAAGAAGTGATTGAGC
CTCTCAAAGAGCAGCTTGATGCTGTTTCATTCGTCTACCGTTCGCAGTTTACAAGTGAGCCGGCCGAACAGCTTGCCGAA
CTCCTGGCTGAATGGCTGCCGGGTGATCTGAATTGGTCTTTCTTTGTCAACAGCGGATCGGAAGCAGTTGAAACCGCCAT
GAAAATCGCCGTTCAATACTGGCAGGAAAAAGGACAAAACGACAAAACGATTTTCCTTTCAAGATGGAACAGCTATCACG
GAATTACAAATGGAGCCCTGTCGCTGTCGGGATTTTATGAGCGCCGCTACAGGTTTACGCACATGCTGCACAAGTATCCC
GCCGCTTCAGCGCCAAACTGCTACAGATGCCGGCTTTCTCATCCTGAATGCCAGGAAGCGTGCGTGAAAGAAATCGAGCT
CGCCGTTAAAAGGATCGGAAAGCAATTCATCGCGGGCTTCGTTGCCGAACCCGTTATTGGGGCTGCTGGAGCAGCTATTA
CGGCACCTGCTGGCTATTATAAAAAAGTAAAAGAAATATGCGAAGATAATGAAATTCTCTTTATCGCGGATGAAGTCATG
AGCGGGATCGGCCGAACCGGCCGGATGCTGGCGATTGAACATTGGGGTGTGACTCCGGATATTGCCGTACTCGGCAAGGG
GCTGAGCGCAGGCTATTCACCGATTGCCGCAGCGGTCATGTCCGACGGCATGATGGAAACGGTCAAAAACGGCTCAGGGG
CCATCATGAGCGGGCATACGTACAGCGCAAACCCCTTTTCAGCCCGTGCTGCGCTCGCCGTTCTCCGCTACATCCTGAAG
CACGATCTTGTCAAACAAGCCGAGATAAAAGGGGAAAAGCTGAAAAGAATGCTGAAAGAAGTTATGAAACAGTCGAGCAT
TATTGGCGACGTTAGGGGCAAGGGACTTCTTCTCGGGATTGAATTTGTCGCCGATCAAAAAAGCAAAAAGACATTTCCTT
CTTCAATGCCGGTGTCGGCTCTCGTCATTTCCGAAGCGAAAAAAAGAGGACTGCTTCTTTATCCGTCCCAGGCGGGTATT
GACGGCGGCGGGGGAGATGCGGTCATCATTGCGCCGCCTCTTACGATATCGGACAAAGAAATGGAAGAGCTCATTGAAAT
ATTTAAACATGCCGTATATGAGATTGAAAAACAAGCGGAAAAGGTGATGCGCGAAAGATGA

Upstream 100 bases:

>100_bases
CTCCGAAATCAACCATTTCCGCGTGAAAAGAGAATGCCGCCTTTTCCCGACTCATATAATGTAAAGAAAAACCTCTCATT
GGGGAAGGGGGGATGTTTTC

Downstream 100 bases:

>100_bases
CGATGCCGAACAAACGTATTGCTGTTGAAGATGCCATTGCCGATTTGAAAGACGAAGCGACCGTCATGTTTGGCGGATTT
GGGGGAGTCGGTTCACCGCC

Product: hypothetical protein

Products: L-Glutamate; L-Glutamate 5-semialdehyde [C]

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MSFLIKPDLHASYPVVQYAKGSWIVDHSGKRYLDGCSGAVTCNLGHGVQEVIEPLKEQLDAVSFVYRSQFTSEPAEQLAE
LLAEWLPGDLNWSFFVNSGSEAVETAMKIAVQYWQEKGQNDKTIFLSRWNSYHGITNGALSLSGFYERRYRFTHMLHKYP
AASAPNCYRCRLSHPECQEACVKEIELAVKRIGKQFIAGFVAEPVIGAAGAAITAPAGYYKKVKEICEDNEILFIADEVM
SGIGRTGRMLAIEHWGVTPDIAVLGKGLSAGYSPIAAAVMSDGMMETVKNGSGAIMSGHTYSANPFSARAALAVLRYILK
HDLVKQAEIKGEKLKRMLKEVMKQSSIIGDVRGKGLLLGIEFVADQKSKKTFPSSMPVSALVISEAKKRGLLLYPSQAGI
DGGGGDAVIIAPPLTISDKEMEELIEIFKHAVYEIEKQAEKVMRER

Sequences:

>Translated_446_residues
MSFLIKPDLHASYPVVQYAKGSWIVDHSGKRYLDGCSGAVTCNLGHGVQEVIEPLKEQLDAVSFVYRSQFTSEPAEQLAE
LLAEWLPGDLNWSFFVNSGSEAVETAMKIAVQYWQEKGQNDKTIFLSRWNSYHGITNGALSLSGFYERRYRFTHMLHKYP
AASAPNCYRCRLSHPECQEACVKEIELAVKRIGKQFIAGFVAEPVIGAAGAAITAPAGYYKKVKEICEDNEILFIADEVM
SGIGRTGRMLAIEHWGVTPDIAVLGKGLSAGYSPIAAAVMSDGMMETVKNGSGAIMSGHTYSANPFSARAALAVLRYILK
HDLVKQAEIKGEKLKRMLKEVMKQSSIIGDVRGKGLLLGIEFVADQKSKKTFPSSMPVSALVISEAKKRGLLLYPSQAGI
DGGGGDAVIIAPPLTISDKEMEELIEIFKHAVYEIEKQAEKVMRER
>Mature_445_residues
SFLIKPDLHASYPVVQYAKGSWIVDHSGKRYLDGCSGAVTCNLGHGVQEVIEPLKEQLDAVSFVYRSQFTSEPAEQLAEL
LAEWLPGDLNWSFFVNSGSEAVETAMKIAVQYWQEKGQNDKTIFLSRWNSYHGITNGALSLSGFYERRYRFTHMLHKYPA
ASAPNCYRCRLSHPECQEACVKEIELAVKRIGKQFIAGFVAEPVIGAAGAAITAPAGYYKKVKEICEDNEILFIADEVMS
GIGRTGRMLAIEHWGVTPDIAVLGKGLSAGYSPIAAAVMSDGMMETVKNGSGAIMSGHTYSANPFSARAALAVLRYILKH
DLVKQAEIKGEKLKRMLKEVMKQSSIIGDVRGKGLLLGIEFVADQKSKKTFPSSMPVSALVISEAKKRGLLLYPSQAGID
GGGGDAVIIAPPLTISDKEMEELIEIFKHAVYEIEKQAEKVMRER

Specific function: Unknown

COG id: COG0161

COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI4557809, Length=434, Percent_Identity=30.184331797235, Blast_Score=159, Evalue=4e-39,
Organism=Homo sapiens, GI37574042, Length=430, Percent_Identity=28.8372093023256, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI226442705, Length=430, Percent_Identity=28.8372093023256, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI13994255, Length=444, Percent_Identity=29.2792792792793, Blast_Score=149, Evalue=5e-36,
Organism=Homo sapiens, GI226442709, Length=396, Percent_Identity=28.5353535353535, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI284507298, Length=343, Percent_Identity=32.3615160349854, Blast_Score=139, Evalue=7e-33,
Organism=Homo sapiens, GI24119277, Length=434, Percent_Identity=26.036866359447, Blast_Score=133, Evalue=4e-31,
Organism=Homo sapiens, GI188536080, Length=453, Percent_Identity=24.7240618101545, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI38679950, Length=453, Percent_Identity=24.7240618101545, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI38679946, Length=453, Percent_Identity=24.7240618101545, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI145693181, Length=433, Percent_Identity=29.7921478060046, Blast_Score=181, Evalue=9e-47,
Organism=Escherichia coli, GI1789016, Length=421, Percent_Identity=30.6413301662708, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI1786991, Length=424, Percent_Identity=29.9528301886792, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1789759, Length=418, Percent_Identity=27.511961722488, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1788044, Length=413, Percent_Identity=27.3607748184019, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI1787560, Length=420, Percent_Identity=26.9047619047619, Blast_Score=128, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI25144271, Length=426, Percent_Identity=29.1079812206573, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI32564660, Length=454, Percent_Identity=28.4140969162996, Blast_Score=153, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI25144274, Length=257, Percent_Identity=34.6303501945525, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI71992977, Length=439, Percent_Identity=26.6514806378132, Blast_Score=135, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6323470, Length=423, Percent_Identity=32.8605200945626, Blast_Score=177, Evalue=4e-45,
Organism=Saccharomyces cerevisiae, GI6324432, Length=415, Percent_Identity=29.3975903614458, Blast_Score=137, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6324386, Length=421, Percent_Identity=24.9406175771971, Blast_Score=107, Evalue=4e-24,
Organism=Drosophila melanogaster, GI161085790, Length=452, Percent_Identity=29.646017699115, Blast_Score=167, Evalue=2e-41,
Organism=Drosophila melanogaster, GI28574759, Length=455, Percent_Identity=29.4505494505495, Blast_Score=166, Evalue=2e-41,
Organism=Drosophila melanogaster, GI21357415, Length=416, Percent_Identity=30.2884615384615, Blast_Score=152, Evalue=5e-37,
Organism=Drosophila melanogaster, GI21356575, Length=441, Percent_Identity=27.2108843537415, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI281366494, Length=378, Percent_Identity=23.8095238095238, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24667139, Length=378, Percent_Identity=23.8095238095238, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24667143, Length=378, Percent_Identity=23.8095238095238, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005814
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00202 Aminotran_3 [H]

EC number: 2.6.1.13 [C]

Molecular weight: Translated: 48935; Mature: 48804

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS00600 AA_TRANSFER_CLASS_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLIKPDLHASYPVVQYAKGSWIVDHSGKRYLDGCSGAVTCNLGHGVQEVIEPLKEQLD
CCEEECCCCCCCCCCEEECCCCEEEECCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
AVSFVYRSQFTSEPAEQLAELLAEWLPGDLNWSFFVNSGSEAVETAMKIAVQYWQEKGQN
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC
DKTIFLSRWNSYHGITNGALSLSGFYERRYRFTHMLHKYPAASAPNCYRCRLSHPECQEA
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHH
CVKEIELAVKRIGKQFIAGFVAEPVIGAAGAAITAPAGYYKKVKEICEDNEILFIADEVM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCCCEEEEHHHHH
SGIGRTGRMLAIEHWGVTPDIAVLGKGLSAGYSPIAAAVMSDGMMETVKNGSGAIMSGHT
HCCCCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHCHHHHHHCCCCCCEEECCC
YSANPFSARAALAVLRYILKHDLVKQAEIKGEKLKRMLKEVMKQSSIIGDVRGKGLLLGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
EFVADQKSKKTFPSSMPVSALVISEAKKRGLLLYPSQAGIDGGGGDAVIIAPPLTISDKE
HHHHCCCHHCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCCCCHHH
MEELIEIFKHAVYEIEKQAEKVMRER
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SFLIKPDLHASYPVVQYAKGSWIVDHSGKRYLDGCSGAVTCNLGHGVQEVIEPLKEQLD
CEEECCCCCCCCCCEEECCCCEEEECCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
AVSFVYRSQFTSEPAEQLAELLAEWLPGDLNWSFFVNSGSEAVETAMKIAVQYWQEKGQN
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC
DKTIFLSRWNSYHGITNGALSLSGFYERRYRFTHMLHKYPAASAPNCYRCRLSHPECQEA
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHH
CVKEIELAVKRIGKQFIAGFVAEPVIGAAGAAITAPAGYYKKVKEICEDNEILFIADEVM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCCCEEEEHHHHH
SGIGRTGRMLAIEHWGVTPDIAVLGKGLSAGYSPIAAAVMSDGMMETVKNGSGAIMSGHT
HCCCCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHCHHHHHHCCCCCCEEECCC
YSANPFSARAALAVLRYILKHDLVKQAEIKGEKLKRMLKEVMKQSSIIGDVRGKGLLLGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
EFVADQKSKKTFPSSMPVSALVISEAKKRGLLLYPSQAGIDGGGGDAVIIAPPLTISDKE
HHHHCCCHHCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCCCCHHH
MEELIEIFKHAVYEIEKQAEKVMRER
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 2-Oxoglutarate; Ornithine [C]

Specific reaction: 2-Oxoglutarate + Ornithine --> L-Glutamate + L-Glutamate 5-semialdehyde [C]

General reaction: Amino group transfer [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]