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The map label for this gene is yojL [H]

Identifier: 52786008

GI number: 52786008

Start: 2224176

End: 2225483

Strand: Reverse

Name: yojL [H]

Synonym: BLi02264

Alternate gene names: 52786008

Gene position: 2225483-2224176 (Counterclockwise)

Preceding gene: 52786010

Following gene: 52786007

Centisome position: 52.7

GC content: 46.87

Gene sequence:

>1308_bases
ATGAAGAAGAAGATAGCAGCAGGTTTGGCGGCCTCTGCGGTAGTTGGAACTTCATTGGCGGCGTCACCGGTCGAAGCCCA
AACCATCAAGGTGAAAAGCGGAGACTCACTGTGGAAGCTTTCAGCTGAGTACAATACGAGTGTTTCGGCACTTCAATCAG
CCAACAATCTTTCATCGACGGTTATTTATGTCGGACAAACTTTAAAAGTTCCGGACGGCAAGTCGAAAAGCAGCTCACAG
ACAAAATCCGCAAGTTCCAGCTCAAGTTCAAGCGCTGCCAAGTCCACTTACACGGTGAAATTGGGAGATTCCTTGTGGCT
GATTGCCAGAGACTACAAAACGACCGTACAAGAGATTAAAAACTTAAACGGGCTGAGCAGCGATATGATTTATCCGGGAC
AAAAGCTGGTTATTAAAGGAAGCGCAAAAAGCGCCGGTTCCAGCTCTGGATCAAGCTCCAAATCATCCGGCTCATCATCC
GGCTCACAAAGTGCAAGCAGTTCAAGCAGCACATACAAAGTCAAATTGGGCGACTCTTTATGGAAAATTGCCAATAGTTT
GAATATGACAGTCGCCGAAATTAAAACGCTGAACAACTTGAAGTCGGACACGATCTACCCGAACCAGGTCCTTAAAGTGA
AAGGAACAGTTTCCAGCGGAAGCAAACCATCTTCTGGTTCGTCTTCAAGCTCTTCATCAAGTAAAACGAACACAGGCAGC
AGTTCAAAAACGACCACTTACACGGTTAAACCGGGCGATTCTCTGTGGAAAATCGCGAATTCGATGAAGGTAACGGTACA
GAGCATCAGAGAGGCTAATCAATTAAAAACAGATGTATTGCAAGTCGGCCAGAAGCTTAAAATTTCTGGTGCATCGTCTT
CAGGGTCATCTGGCAGCCCATCTTCCAGCTCGCCGAACTCTTCAGTTTCAACCGGCACTTCGACAAGCGCAAAAGTCGAG
CGGATGATTGCAGAGGCAGAAAAGCATATCGGCGTGCCTTACAGATGGGGAGGCAACAATCCTTCCGGTTTTGACTGCAG
CGGATTCATCTATTACACGTTGAACAAAGTTACATCTGTCTCAAGGCTGAGCGCAGCAGGATACTGGAACATCATGTCGC
CAGTCAGCCAGCCTTCAAGAGGTGATTTTGTTTTCTTCTCAACATATAAAGCGGGCCCTTCACACGTCGGCATTTATTTA
GGAAACAACAAGTTTATCAATGCCAACGATTCCGGCGTCACCGTGAGCGACATGAACAATTCCTACTGGAAGCAGCGCTA
TCTCGGCGCAAAACGGTATTCATTTTAA

Upstream 100 bases:

>100_bases
ATCAGATCACCCGCCTGATCGGCTGGATAAAGTCTTAAGCAATGGCAAATGTAATGGCATACATAGAGAGAACGAAAATG
AAACGGGAGGTTAAGAGGTT

Downstream 100 bases:

>100_bases
AAAAGCCATTTTATATGGCTTTTTTTTGCGTGGTTTCAGGATGGGAAGGACAGGTTTAATGCCCCTCTTCATTGTCTAAA
CTGAAAAGAAAAGCGAAGGG

Product: YojL

Products: NA

Alternate protein names: Cell wall lytic enzyme associated with cell separation [H]

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKKKIAAGLAASAVVGTSLAASPVEAQTIKVKSGDSLWKLSAEYNTSVSALQSANNLSSTVIYVGQTLKVPDGKSKSSSQ
TKSASSSSSSSAAKSTYTVKLGDSLWLIARDYKTTVQEIKNLNGLSSDMIYPGQKLVIKGSAKSAGSSSGSSSKSSGSSS
GSQSASSSSSTYKVKLGDSLWKIANSLNMTVAEIKTLNNLKSDTIYPNQVLKVKGTVSSGSKPSSGSSSSSSSSKTNTGS
SSKTTTYTVKPGDSLWKIANSMKVTVQSIREANQLKTDVLQVGQKLKISGASSSGSSGSPSSSSPNSSVSTGTSTSAKVE
RMIAEAEKHIGVPYRWGGNNPSGFDCSGFIYYTLNKVTSVSRLSAAGYWNIMSPVSQPSRGDFVFFSTYKAGPSHVGIYL
GNNKFINANDSGVTVSDMNNSYWKQRYLGAKRYSF

Sequences:

>Translated_435_residues
MKKKIAAGLAASAVVGTSLAASPVEAQTIKVKSGDSLWKLSAEYNTSVSALQSANNLSSTVIYVGQTLKVPDGKSKSSSQ
TKSASSSSSSSAAKSTYTVKLGDSLWLIARDYKTTVQEIKNLNGLSSDMIYPGQKLVIKGSAKSAGSSSGSSSKSSGSSS
GSQSASSSSSTYKVKLGDSLWKIANSLNMTVAEIKTLNNLKSDTIYPNQVLKVKGTVSSGSKPSSGSSSSSSSSKTNTGS
SSKTTTYTVKPGDSLWKIANSMKVTVQSIREANQLKTDVLQVGQKLKISGASSSGSSGSPSSSSPNSSVSTGTSTSAKVE
RMIAEAEKHIGVPYRWGGNNPSGFDCSGFIYYTLNKVTSVSRLSAAGYWNIMSPVSQPSRGDFVFFSTYKAGPSHVGIYL
GNNKFINANDSGVTVSDMNNSYWKQRYLGAKRYSF
>Mature_435_residues
MKKKIAAGLAASAVVGTSLAASPVEAQTIKVKSGDSLWKLSAEYNTSVSALQSANNLSSTVIYVGQTLKVPDGKSKSSSQ
TKSASSSSSSSAAKSTYTVKLGDSLWLIARDYKTTVQEIKNLNGLSSDMIYPGQKLVIKGSAKSAGSSSGSSSKSSGSSS
GSQSASSSSSTYKVKLGDSLWKIANSLNMTVAEIKTLNNLKSDTIYPNQVLKVKGTVSSGSKPSSGSSSSSSSSKTNTGS
SSKTTTYTVKPGDSLWKIANSMKVTVQSIREANQLKTDVLQVGQKLKISGASSSGSSGSPSSSSPNSSVSTGTSTSAKVE
RMIAEAEKHIGVPYRWGGNNPSGFDCSGFIYYTLNKVTSVSRLSAAGYWNIMSPVSQPSRGDFVFFSTYKAGPSHVGIYL
GNNKFINANDSGVTVSDMNNSYWKQRYLGAKRYSF

Specific function: Probably functions as a cell separation enzyme in addition to lytE and lytF [H]

COG id: COG1388

COG function: function code M; FOG: LysM repeat

Gene ontology:

Cell location: Cell surface. Note=Localized at cell separation sites and cell poles during late vegetative phase [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 LysM repeats [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=114, Percent_Identity=37.719298245614, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1786421, Length=119, Percent_Identity=32.7731092436975, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788501, Length=107, Percent_Identity=42.0560747663551, Blast_Score=75, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17559362, Length=327, Percent_Identity=22.9357798165138, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF00877 NLPC_P60 [H]

EC number: =3.4.19.11 [H]

Molecular weight: Translated: 45440; Mature: 45440

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKIAAGLAASAVVGTSLAASPVEAQTIKVKSGDSLWKLSAEYNTSVSALQSANNLSST
CCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCE
VIYVGQTLKVPDGKSKSSSQTKSASSSSSSSAAKSTYTVKLGDSLWLIARDYKTTVQEIK
EEEECCEEECCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEECCEEEEEEECHHHHHHHHH
NLNGLSSDMIYPGQKLVIKGSAKSAGSSSGSSSKSSGSSSGSQSASSSSSTYKVKLGDSL
HCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH
WKIANSLNMTVAEIKTLNNLKSDTIYPNQVLKVKGTVSSGSKPSSGSSSSSSSSKTNTGS
HHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
SSKTTTYTVKPGDSLWKIANSMKVTVQSIREANQLKTDVLQVGQKLKISGASSSGSSGSP
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
SSSSPNSSVSTGTSTSAKVERMIAEAEKHIGVPYRWGGNNPSGFDCSGFIYYTLNKVTSV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEHHHHHH
SRLSAAGYWNIMSPVSQPSRGDFVFFSTYKAGPSHVGIYLGNNKFINANDSGVTVSDMNN
HHHHHCCCCHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEECCCCCCEEEECCCC
SYWKQRYLGAKRYSF
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKKIAAGLAASAVVGTSLAASPVEAQTIKVKSGDSLWKLSAEYNTSVSALQSANNLSST
CCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCE
VIYVGQTLKVPDGKSKSSSQTKSASSSSSSSAAKSTYTVKLGDSLWLIARDYKTTVQEIK
EEEECCEEECCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEECCEEEEEEECHHHHHHHHH
NLNGLSSDMIYPGQKLVIKGSAKSAGSSSGSSSKSSGSSSGSQSASSSSSTYKVKLGDSL
HCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH
WKIANSLNMTVAEIKTLNNLKSDTIYPNQVLKVKGTVSSGSKPSSGSSSSSSSSKTNTGS
HHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
SSKTTTYTVKPGDSLWKIANSMKVTVQSIREANQLKTDVLQVGQKLKISGASSSGSSGSP
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
SSSSPNSSVSTGTSTSAKVERMIAEAEKHIGVPYRWGGNNPSGFDCSGFIYYTLNKVTSV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEHHHHHH
SRLSAAGYWNIMSPVSQPSRGDFVFFSTYKAGPSHVGIYLGNNKFINANDSGVTVSDMNN
HHHHHCCCCHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEECCCCCCEEEECCCC
SYWKQRYLGAKRYSF
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]