Click here to switch to the map view.

The map label for this gene is yocR [H]

Identifier: 52786001

GI number: 52786001

Start: 2213485

End: 2214825

Strand: Reverse

Name: yocR [H]

Synonym: BLi02256

Alternate gene names: 52786001

Gene position: 2214825-2213485 (Counterclockwise)

Preceding gene: 52786003

Following gene: 52785997

Centisome position: 52.45

GC content: 44.07

Gene sequence:

>1341_bases
GTGGAAAATAAACAAAATATATGGTCATCAAAGCTTGGATTTATCTTAGCTTCGGCCGGTTCGGCAATCGGGCTCGGCGC
GATATGGAAGTTTCCTTATGTTGCCGGAACAAGCGGCGGCGGAGCATTTTTACTTATGTTTATTCTTTTTACTTTATTGA
TTGGGCTTCCTTTATTAATGGCGGAGTTCATTATCGGCAGAAAGACTCAAAAAGATGCGGTTGAATCCTATAAGGAGCTT
GCTCCCGGCTCGCTCTGGCACTGGGTTGGGCGCCTCGGCATTATCACGTGTTTCATTCTGCTGTCTTTCTATAGTGTTGT
CGGCGGCTGGATCATCATTTATATTGTCAAAGGGCTGACCGGTGAACTGTCAAGAAGTACGGATTATGCCGGTCTTTTCG
GGGAGACGATTGCAAATCCGTATCTCGTTCTAGGGAGCCAGTTTGCATTTATCATCATAACGATCCTTGTTGTTGCAAAA
GGAGTCAGAAGCGGAATAGAAAAGGCGAGCAAGTTTATGATGCCTGCTCTGTTCATTATTTTTCTGCTTTTGATCGTTCG
TTCGCTCACACTTCCCGGTTCAATGGAGGGCTTGGAGTTTTTCTTAAAACCTGATCTTTCACATATCAAAGCCGAAACGG
TGCTGTTTGCGCTTGGACAATCCTTTTTCTCGCTAAGCGTCGGTGTTTCCGTGATGGTAACGTACAGCTCTTATTTATCG
AAAAAAGAAAACCTTGTACAGTCAGCCGTATCAGTGACATTGCTCAATGTATCTGTAGCGATTCTTGCCGGGTTTGCGAT
TTTTCCGGCCGTTTTTTCATTCGGATTATCTCCTGATGCCGGCCCGATGCTGTTATTTAATGTGCTGCCGTCAGTCTTTC
ATAAGATGCCTTTAGGAATCATCTTTTTATTGGCGTTTCTGCTCTTATTTTTATTTGCTACACTGACGTCTGCATTTTCA
ATGCTTGAAATCCTTGTTTCTTCCTTGTCAAAAGGGGATCCTAAGAAAAGACAGGCTTTCGCTTGGGCGGGAGGAATTGC
GATTTTCCTATTCGGTATTCCTTCAGCATTGTCATACGGCGTGCTTCAGGATGTGTCGATTTTTAATCTATCCATTTTTG
ATGCGGCGGATTATCTTGTCAGCAATATATTAATGCCGCTCGGCGCTTTGCTAATTGCCGTTTTCGTGCCGCTCAAAATT
CCGAAAGACGAGCTTTTTGCCGAATTGAAAGAAGGCTCTAAAATCAGCAGAAAATGGTTTGCAGCCTGGCTTCTGCTGAT
CCGCTACGCAGCTCCAATCGTCATTATTGTCGTCTTTTTGGATGCTATCGGGGTATTTTAA

Upstream 100 bases:

>100_bases
ACTGAAAGAAATGTTTGAAAACCTTGACGAATTCGTTTATGCTTTTTAAAATGATAGTTTGTAGCCATGTGCAATTAGAC
CGAGAAGAAGAGGTGCTTAA

Downstream 100 bases:

>100_bases
GAATAAATTGTTTTTAAAAGGCCGGACCATCCGGCCTTTTTTCATGCAGACAGTTGCGTGTCGCTTAGGTCAGCCGCACT
TTCATTTCTCGGCGGTATAA

Product: YocR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MENKQNIWSSKLGFILASAGSAIGLGAIWKFPYVAGTSGGGAFLLMFILFTLLIGLPLLMAEFIIGRKTQKDAVESYKEL
APGSLWHWVGRLGIITCFILLSFYSVVGGWIIIYIVKGLTGELSRSTDYAGLFGETIANPYLVLGSQFAFIIITILVVAK
GVRSGIEKASKFMMPALFIIFLLLIVRSLTLPGSMEGLEFFLKPDLSHIKAETVLFALGQSFFSLSVGVSVMVTYSSYLS
KKENLVQSAVSVTLLNVSVAILAGFAIFPAVFSFGLSPDAGPMLLFNVLPSVFHKMPLGIIFLLAFLLLFLFATLTSAFS
MLEILVSSLSKGDPKKRQAFAWAGGIAIFLFGIPSALSYGVLQDVSIFNLSIFDAADYLVSNILMPLGALLIAVFVPLKI
PKDELFAELKEGSKISRKWFAAWLLLIRYAAPIVIIVVFLDAIGVF

Sequences:

>Translated_446_residues
MENKQNIWSSKLGFILASAGSAIGLGAIWKFPYVAGTSGGGAFLLMFILFTLLIGLPLLMAEFIIGRKTQKDAVESYKEL
APGSLWHWVGRLGIITCFILLSFYSVVGGWIIIYIVKGLTGELSRSTDYAGLFGETIANPYLVLGSQFAFIIITILVVAK
GVRSGIEKASKFMMPALFIIFLLLIVRSLTLPGSMEGLEFFLKPDLSHIKAETVLFALGQSFFSLSVGVSVMVTYSSYLS
KKENLVQSAVSVTLLNVSVAILAGFAIFPAVFSFGLSPDAGPMLLFNVLPSVFHKMPLGIIFLLAFLLLFLFATLTSAFS
MLEILVSSLSKGDPKKRQAFAWAGGIAIFLFGIPSALSYGVLQDVSIFNLSIFDAADYLVSNILMPLGALLIAVFVPLKI
PKDELFAELKEGSKISRKWFAAWLLLIRYAAPIVIIVVFLDAIGVF
>Mature_446_residues
MENKQNIWSSKLGFILASAGSAIGLGAIWKFPYVAGTSGGGAFLLMFILFTLLIGLPLLMAEFIIGRKTQKDAVESYKEL
APGSLWHWVGRLGIITCFILLSFYSVVGGWIIIYIVKGLTGELSRSTDYAGLFGETIANPYLVLGSQFAFIIITILVVAK
GVRSGIEKASKFMMPALFIIFLLLIVRSLTLPGSMEGLEFFLKPDLSHIKAETVLFALGQSFFSLSVGVSVMVTYSSYLS
KKENLVQSAVSVTLLNVSVAILAGFAIFPAVFSFGLSPDAGPMLLFNVLPSVFHKMPLGIIFLLAFLLLFLFATLTSAFS
MLEILVSSLSKGDPKKRQAFAWAGGIAIFLFGIPSALSYGVLQDVSIFNLSIFDAADYLVSNILMPLGALLIAVFVPLKI
PKDELFAELKEGSKISRKWFAAWLLLIRYAAPIVIIVVFLDAIGVF

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=412, Percent_Identity=25.7281553398058, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI7657587, Length=384, Percent_Identity=25.5208333333333, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI171184408, Length=385, Percent_Identity=25.1948051948052, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI171184406, Length=385, Percent_Identity=25.1948051948052, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI171184404, Length=385, Percent_Identity=25.1948051948052, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI134304856, Length=409, Percent_Identity=28.1173594132029, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI21361581, Length=382, Percent_Identity=24.3455497382199, Blast_Score=125, Evalue=9e-29,
Organism=Homo sapiens, GI188528618, Length=405, Percent_Identity=24.4444444444444, Blast_Score=121, Evalue=2e-27,
Organism=Homo sapiens, GI197276623, Length=379, Percent_Identity=27.1767810026385, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI54607094, Length=379, Percent_Identity=27.1767810026385, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI194018524, Length=320, Percent_Identity=28.125, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI4507041, Length=382, Percent_Identity=25.130890052356, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI33354281, Length=306, Percent_Identity=26.1437908496732, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI51468073, Length=294, Percent_Identity=25.5102040816327, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI58219014, Length=305, Percent_Identity=26.8852459016393, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI11181770, Length=297, Percent_Identity=26.2626262626263, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI289191351, Length=312, Percent_Identity=25, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI4557046, Length=312, Percent_Identity=25, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI289191377, Length=312, Percent_Identity=25, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI5032097, Length=383, Percent_Identity=24.5430809399478, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI12408638, Length=275, Percent_Identity=25.0909090909091, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI92859670, Length=217, Percent_Identity=29.4930875576037, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI21361693, Length=117, Percent_Identity=31.6239316239316, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI218563756, Length=383, Percent_Identity=23.7597911227154, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI197276625, Length=120, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI55749589, Length=284, Percent_Identity=23.943661971831, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI300360519, Length=194, Percent_Identity=26.2886597938144, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555248, Length=402, Percent_Identity=26.6169154228856, Blast_Score=128, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI25146584, Length=432, Percent_Identity=26.8518518518519, Blast_Score=117, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI71995588, Length=413, Percent_Identity=23.9709443099274, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17554804, Length=461, Percent_Identity=23.644251626898, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI133952791, Length=196, Percent_Identity=30.1020408163265, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71998244, Length=330, Percent_Identity=24.2424242424242, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17542050, Length=124, Percent_Identity=32.258064516129, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17535731, Length=147, Percent_Identity=30.6122448979592, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534083, Length=441, Percent_Identity=21.7687074829932, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17136952, Length=415, Percent_Identity=25.3012048192771, Blast_Score=149, Evalue=3e-36,
Organism=Drosophila melanogaster, GI281364394, Length=416, Percent_Identity=25.7211538461538, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI28574704, Length=416, Percent_Identity=25.7211538461538, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI17136950, Length=416, Percent_Identity=25.7211538461538, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI28574702, Length=416, Percent_Identity=25.7211538461538, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI24762620, Length=505, Percent_Identity=25.5445544554455, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24655079, Length=300, Percent_Identity=28, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24639514, Length=296, Percent_Identity=25.6756756756757, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24639516, Length=299, Percent_Identity=25.4180602006689, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI221329674, Length=299, Percent_Identity=25.4180602006689, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI281364136, Length=515, Percent_Identity=24.6601941747573, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI45551088, Length=306, Percent_Identity=25.4901960784314, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24652942, Length=303, Percent_Identity=26.0726072607261, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI19921936, Length=311, Percent_Identity=25.7234726688103, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI281365034, Length=317, Percent_Identity=26.1829652996845, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24661428, Length=362, Percent_Identity=25.6906077348066, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI19921352, Length=321, Percent_Identity=26.1682242990654, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24584353, Length=321, Percent_Identity=26.1682242990654, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI281363702, Length=302, Percent_Identity=25.1655629139073, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI281363700, Length=302, Percent_Identity=25.1655629139073, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24582567, Length=376, Percent_Identity=27.1276595744681, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24654186, Length=200, Percent_Identity=32, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24639853, Length=326, Percent_Identity=26.3803680981595, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI45550877, Length=217, Percent_Identity=27.1889400921659, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45551183, Length=251, Percent_Identity=27.4900398406374, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48417; Mature: 48417

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]