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The map label for this gene is yvdT [H]

Identifier: 52785765

GI number: 52785765

Start: 1961774

End: 1962358

Strand: Direct

Name: yvdT [H]

Synonym: BLi02009

Alternate gene names: 52785765

Gene position: 1961774-1962358 (Clockwise)

Preceding gene: 52785763

Following gene: 52785766

Centisome position: 46.46

GC content: 42.91

Gene sequence:

>585_bases
ATGTCAAAGCAAACGTCCGGGAAATATGAAAAGATTTTGCAGGCGGCCATTGAAGTCATTTCTGAAAAAGGGCTTGATAA
GGCGTCGATTTCAGATATCGTGAAAAAGGCGGGTACTGCGCAAGGCACTTTTTATCTTTATTTCTCATCCAAAAATGCGC
TGATTCCAGCGATCGCGGAAAATCTTCTGACACATTCTTTGGACCATATTAAGAGCAAGGTCGACGGAACCATGTCTTTC
TGGACCGCCTTGGATATCATGATCGATGAGACGTTCAACATGACGGAACTTCATCAGGATATTATCGTTCTTTGCTACTC
AGGTCTTGCCTTTGACCATTCGATGGAAAAATGGGAGGCAATCTATCAGCCTTATTATTCCTGGCTTGAAGGACTTATTG
AAAAAGCAGTTGAGAAAAACGAGGTCATTCCGGCCATTAATGTGCGCTGGACGGCCCGAACGATTATCAACTTTGTCGAA
AACACAGCGGAACGTTATTACATCGGGGCGGAAAACGACGAAGAGCTCAGTGTGTTCAAAAAAGAAATATTTACTTTTCT
GAAGAGAAGCATAGGAACCAAGTAA

Upstream 100 bases:

>100_bases
AAGAAATTTTAAGGAAATAAGTCCTGTGCCGACCGGTTGACAATGAAAAGCCGATCATCTAAAATGAATGATAGTCATTC
ATTTTTAGGGAGGTCTGCAT

Downstream 100 bases:

>100_bases
AAAATGACCGGCTGCAGCTGTTCATTTTTTATCGGACTAAAAAATGACTGACGTTCATTCACAATAGGAAGGGTGTTATC
ATTGAGTTGGCTCCTCGTAA

Product: YvdT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHSLDHIKSKVDGTMSF
WTALDIMIDETFNMTELHQDIIVLCYSGLAFDHSMEKWEAIYQPYYSWLEGLIEKAVEKNEVIPAINVRWTARTIINFVE
NTAERYYIGAENDEELSVFKKEIFTFLKRSIGTK

Sequences:

>Translated_194_residues
MSKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHSLDHIKSKVDGTMSF
WTALDIMIDETFNMTELHQDIIVLCYSGLAFDHSMEKWEAIYQPYYSWLEGLIEKAVEKNEVIPAINVRWTARTIINFVE
NTAERYYIGAENDEELSVFKKEIFTFLKRSIGTK
>Mature_193_residues
SKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHSLDHIKSKVDGTMSFW
TALDIMIDETFNMTELHQDIIVLCYSGLAFDHSMEKWEAIYQPYYSWLEGLIEKAVEKNEVIPAINVRWTARTIINFVEN
TAERYYIGAENDEELSVFKKEIFTFLKRSIGTK

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22110; Mature: 21978

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAE
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
NLLTHSLDHIKSKVDGTMSFWTALDIMIDETFNMTELHQDIIVLCYSGLAFDHSMEKWEA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
IYQPYYSWLEGLIEKAVEKNEVIPAINVRWTARTIINFVENTAERYYIGAENDEELSVFK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH
KEIFTFLKRSIGTK
HHHHHHHHHHHCCC
>Mature Secondary Structure 
SKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAE
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
NLLTHSLDHIKSKVDGTMSFWTALDIMIDETFNMTELHQDIIVLCYSGLAFDHSMEKWEA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
IYQPYYSWLEGLIEKAVEKNEVIPAINVRWTARTIINFVENTAERYYIGAENDEELSVFK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH
KEIFTFLKRSIGTK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]