Click here to switch to the map view.

The map label for this gene is glnR [H]

Identifier: 52785748

GI number: 52785748

Start: 1947667

End: 1948074

Strand: Direct

Name: glnR [H]

Synonym: BLi01992

Alternate gene names: 52785748

Gene position: 1947667-1948074 (Clockwise)

Preceding gene: 52785747

Following gene: 52785749

Centisome position: 46.12

GC content: 42.4

Gene sequence:

>408_bases
ATGAGTGATAAAATTCGCCGCTCAATGCCCTTATTTCCGATAGGTATCGTCATGCAGCTGACTGAACTGTCCGCAAGGCA
AATTCGGTATTATGAGGAAAATGGACTGGTATTTCCTGCAAGAAGCGAAGGGAACAGACGTTTATTTTCATTCCATGATG
TAGATAAGCTGCTCGAAATTAAAGATTTGATCGAACAAGGTGTAAACATGGCGGGGATCAAACAAATTTTCGCCAAAACA
GAAAACGAACAAAAAGAAGACAAACAAGACAAGCCGAAAAAAGCAGAGAAGCACAACTTGTCGGATGAAGAACTGAGAAA
ACTGCTGAAAAACGAGCTCATCCAAGCAGGCCGTTTCCAAAGAGGGACGACATTCCGCCAGGGAGACATGTCCAGGTTTT
TTCATTAA

Upstream 100 bases:

>100_bases
AAAATAAAGAATATTTTCATGTAAAGAATCCTTACATCGAGTTGACACATTATATAACATCACATATAATAAATTTATAT
AAGAAAAGGAGGAAATTGAG

Downstream 100 bases:

>100_bases
TTTGTTAGCAACTGCATTGCTATATACATTTACCTTTTAGAGGAGGAGTTTTACGAATGGCAAAGTATACAAGAGACGAC
ATTGTTAAACTAGTAAATGA

Product: GlnR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSDKIRRSMPLFPIGIVMQLTELSARQIRYYEENGLVFPARSEGNRRLFSFHDVDKLLEIKDLIEQGVNMAGIKQIFAKT
ENEQKEDKQDKPKKAEKHNLSDEELRKLLKNELIQAGRFQRGTTFRQGDMSRFFH

Sequences:

>Translated_135_residues
MSDKIRRSMPLFPIGIVMQLTELSARQIRYYEENGLVFPARSEGNRRLFSFHDVDKLLEIKDLIEQGVNMAGIKQIFAKT
ENEQKEDKQDKPKKAEKHNLSDEELRKLLKNELIQAGRFQRGTTFRQGDMSRFFH
>Mature_134_residues
SDKIRRSMPLFPIGIVMQLTELSARQIRYYEENGLVFPARSEGNRRLFSFHDVDKLLEIKDLIEQGVNMAGIKQIFAKTE
NEQKEDKQDKPKKAEKHNLSDEELRKLLKNELIQAGRFQRGTTFRQGDMSRFFH

Specific function: Represses many genes including the glnRA operon and tnrA during growth with nitrogen excess [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 15886; Mature: 15754

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKIRRSMPLFPIGIVMQLTELSARQIRYYEENGLVFPARSEGNRRLFSFHDVDKLLEI
CCCCHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCEEECHHHHHHHHHH
KDLIEQGVNMAGIKQIFAKTENEQKEDKQDKPKKAEKHNLSDEELRKLLKNELIQAGRFQ
HHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCC
RGTTFRQGDMSRFFH
CCCCCCCCCHHHCCC
>Mature Secondary Structure 
SDKIRRSMPLFPIGIVMQLTELSARQIRYYEENGLVFPARSEGNRRLFSFHDVDKLLEI
CCCHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCEEECHHHHHHHHHH
KDLIEQGVNMAGIKQIFAKTENEQKEDKQDKPKKAEKHNLSDEELRKLLKNELIQAGRFQ
HHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCC
RGTTFRQGDMSRFFH
CCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2906311; 2573733; 1677938; 9384377 [H]