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The map label for this gene is ydhC [H]

Identifier: 52785729

GI number: 52785729

Start: 1926871

End: 1927575

Strand: Direct

Name: ydhC [H]

Synonym: BLi01972

Alternate gene names: 52785729

Gene position: 1926871-1927575 (Clockwise)

Preceding gene: 52785728

Following gene: 52785730

Centisome position: 45.63

GC content: 48.51

Gene sequence:

>705_bases
TTGCTTGTGCGAAAAACCAAAAACCGATATATTGGTTTTATGATGAAGAATAACATTAAACGAATCAAACGAATTTCGCT
TCGGGAAGAAGTGTATCAAACGCTGAAGCGCGCCATCGTACATTTGGAGCTAAAGCCGGAGGAGCGCCTGCATGACCAGG
AGCTTGCAGAGCAGTTTGGCATCAGCCGCACACCTGTCAGGGAGGCGCTCAAACGACTGGAAGATGAAGGCCTTGTTGAA
GCTGTCCCGGGATCGGCAACACGTGTAGCACCGTTAAATCGCGAGGAGGCTGAACACGCTTTTACAGTCACTGCGGCGCT
GCATGCGCTGGCTGTCAGACTGTCGCTTCCTTTTTTAACGGATTCCGACTTTGATCAGCTGGAGGCGCATAACAAAACGT
TGCAGCAAGCGATTCAAAAAGAAGACATTATCGAAGCAATCGAATCAGATGCTGCTTTTCATGACGTGTTTTTACAAGCA
TCAAAAAACCCGGAAATAACCCGGGCATTGGAAAGGATTTCTTCAAAAATTTACCGCCTTGAAATGTCGCAGTTTTCCTC
GATCGGCAGCTTGAAATCTGTTGAACAGCATCAGAACATCATCGATGCCTGCAGACAGGGGGATCGGAATGCGGCCATCA
AGCTTGCCGAGGAAAACTGGCTCAGTCTCGGAGATCGATTGGCCGGACATCAGGAAAAGGAGTGA

Upstream 100 bases:

>100_bases
TTAAAGTGACACATCACCGATTGGAACTGTACGGCATCTGCAACGATTGCCAGGCGAAAAGAAAATACGCCGCTAAAGAG
AAAGGGGTTAGATAAAAAAT

Downstream 100 bases:

>100_bases
AGGGATTGTGAGGCCGATTATACTGGGCGTTTTTGCAGCCTTCTTTTTTGCTTTTACATTCGTTTTAAACAGGGCGATGG
AGCTTGAAGGGGGAAGCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLVRKTKNRYIGFMMKNNIKRIKRISLREEVYQTLKRAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVE
AVPGSATRVAPLNREEAEHAFTVTAALHALAVRLSLPFLTDSDFDQLEAHNKTLQQAIQKEDIIEAIESDAAFHDVFLQA
SKNPEITRALERISSKIYRLEMSQFSSIGSLKSVEQHQNIIDACRQGDRNAAIKLAEENWLSLGDRLAGHQEKE

Sequences:

>Translated_234_residues
MLVRKTKNRYIGFMMKNNIKRIKRISLREEVYQTLKRAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVE
AVPGSATRVAPLNREEAEHAFTVTAALHALAVRLSLPFLTDSDFDQLEAHNKTLQQAIQKEDIIEAIESDAAFHDVFLQA
SKNPEITRALERISSKIYRLEMSQFSSIGSLKSVEQHQNIIDACRQGDRNAAIKLAEENWLSLGDRLAGHQEKE
>Mature_234_residues
MLVRKTKNRYIGFMMKNNIKRIKRISLREEVYQTLKRAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVE
AVPGSATRVAPLNREEAEHAFTVTAALHALAVRLSLPFLTDSDFDQLEAHNKTLQQAIQKEDIIEAIESDAAFHDVFLQA
SKNPEITRALERISSKIYRLEMSQFSSIGSLKSVEQHQNIIDACRQGDRNAAIKLAEENWLSLGDRLAGHQEKE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=187, Percent_Identity=24.0641711229947, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI87081914, Length=157, Percent_Identity=30.5732484076433, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994961, Length=188, Percent_Identity=30.3191489361702, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26720; Mature: 26720

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVRKTKNRYIGFMMKNNIKRIKRISLREEVYQTLKRAIVHLELKPEERLHDQELAEQFG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
ISRTPVREALKRLEDEGLVEAVPGSATRVAPLNREEAEHAFTVTAALHALAVRLSLPFLT
CCCCHHHHHHHHHCCCCCEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
DSDFDQLEAHNKTLQQAIQKEDIIEAIESDAAFHDVFLQASKNPEITRALERISSKIYRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
EMSQFSSIGSLKSVEQHQNIIDACRQGDRNAAIKLAEENWLSLGDRLAGHQEKE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLVRKTKNRYIGFMMKNNIKRIKRISLREEVYQTLKRAIVHLELKPEERLHDQELAEQFG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
ISRTPVREALKRLEDEGLVEAVPGSATRVAPLNREEAEHAFTVTAALHALAVRLSLPFLT
CCCCHHHHHHHHHCCCCCEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
DSDFDQLEAHNKTLQQAIQKEDIIEAIESDAAFHDVFLQASKNPEITRALERISSKIYRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
EMSQFSSIGSLKSVEQHQNIIDACRQGDRNAAIKLAEENWLSLGDRLAGHQEKE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]