Click here to switch to the map view.

The map label for this gene is ycgS [H]

Identifier: 52785702

GI number: 52785702

Start: 1905140

End: 1905769

Strand: Direct

Name: ycgS [H]

Synonym: BLi01944

Alternate gene names: 52785702

Gene position: 1905140-1905769 (Clockwise)

Preceding gene: 52785701

Following gene: 52785703

Centisome position: 45.12

GC content: 41.59

Gene sequence:

>630_bases
ATGAAACTGCTTGATCATTTAAATATCAAGAAAGTTCATGTGGTTGCGGTGTCAGCCGGCGGGCCAAGCGGAATATGTTT
TGCATCCAAATACTCGGAAAGAGTAGAATCCTTAATTTTGCAAAGCGCTGTCACAAAGCAGTGGCTGACAGCGAAGGATA
TTGAATATAAAGTTGGTCAGATCATCTTTCGGCCGCCTGTTGAAAAGGCCGTATGGAAGCTGATATCGGCGCTTAACAAT
CGATTTCCGGAATGGATCTTTAAGAAAATGCTATCCTCCTTTACTACACTTCCTGCTGATCAGGCGATGCTGAAAGTCAC
GGAGGGAGATATTGAAGAAATGAGAAAAATGAACAACAGACAGCGTTCAAGTCGAGGGTTCTTGCTTGATTTAAAAAATA
TAGACGATTTATCTTTCCATCATTTGAAGGAGATTTCTTGTCCGGTATTAATTATGCATTGCCGATATGATCGTGTTGTT
CCAGCCGAGCATGCTTTTCATGCAAAAAAACTGATTCCTTTTTCAGAAGTCTATCAGGCAGACAGCTGGGGTCATCTCAT
TTGGCTGGGAACAGAGGGTAAATCTGTCTCACAGAAGGTCATCAGCTTTTTAAAAACCACATCATCTTGA

Upstream 100 bases:

>100_bases
TTTATGAGAGCCGATTCTCTATCATCACGCCTTCCCGTGCAGGGTATGGCCGGACATCGAAAGAAATCGGGGACAGTTTG
GAACTTGCCTGCTATTACAT

Downstream 100 bases:

>100_bases
TCATAAGATGAATAAAATTTTAGGATCGCAGCCTACCCGCAAATGAAGTAGTGCAATTTTTTAATCAAGAGCAGAATGAT
CTTTCCGAACAGAACTGATG

Product: hypothetical protein

Products: 2-oxopent-4-enoate; succinate [C]

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKLLDHLNIKKVHVVAVSAGGPSGICFASKYSERVESLILQSAVTKQWLTAKDIEYKVGQIIFRPPVEKAVWKLISALNN
RFPEWIFKKMLSSFTTLPADQAMLKVTEGDIEEMRKMNNRQRSSRGFLLDLKNIDDLSFHHLKEISCPVLIMHCRYDRVV
PAEHAFHAKKLIPFSEVYQADSWGHLIWLGTEGKSVSQKVISFLKTTSS

Sequences:

>Translated_209_residues
MKLLDHLNIKKVHVVAVSAGGPSGICFASKYSERVESLILQSAVTKQWLTAKDIEYKVGQIIFRPPVEKAVWKLISALNN
RFPEWIFKKMLSSFTTLPADQAMLKVTEGDIEEMRKMNNRQRSSRGFLLDLKNIDDLSFHHLKEISCPVLIMHCRYDRVV
PAEHAFHAKKLIPFSEVYQADSWGHLIWLGTEGKSVSQKVISFLKTTSS
>Mature_209_residues
MKLLDHLNIKKVHVVAVSAGGPSGICFASKYSERVESLILQSAVTKQWLTAKDIEYKVGQIIFRPPVEKAVWKLISALNN
RFPEWIFKKMLSSFTTLPADQAMLKVTEGDIEEMRKMNNRQRSSRGFLLDLKNIDDLSFHHLKEISCPVLIMHCRYDRVV
PAEHAFHAKKLIPFSEVYQADSWGHLIWLGTEGKSVSQKVISFLKTTSS

Specific function: 3-hydroxyphenylpropionate degradation. [C]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: 3.7.1.- [C]

Molecular weight: Translated: 23828; Mature: 23828

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLDHLNIKKVHVVAVSAGGPSGICFASKYSERVESLILQSAVTKQWLTAKDIEYKVGQ
CCCCHHCCCEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCE
IIFRPPVEKAVWKLISALNNRFPEWIFKKMLSSFTTLPADQAMLKVTEGDIEEMRKMNNR
EEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHEEECCCCHHHHHHHHHH
QRSSRGFLLDLKNIDDLSFHHLKEISCPVLIMHCRYDRVVPAEHAFHAKKLIPFSEVYQA
HHCCCCEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHCC
DSWGHLIWLGTEGKSVSQKVISFLKTTSS
CCCCCEEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLLDHLNIKKVHVVAVSAGGPSGICFASKYSERVESLILQSAVTKQWLTAKDIEYKVGQ
CCCCHHCCCEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCE
IIFRPPVEKAVWKLISALNNRFPEWIFKKMLSSFTTLPADQAMLKVTEGDIEEMRKMNNR
EEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHEEECCCCHHHHHHHHHH
QRSSRGFLLDLKNIDDLSFHHLKEISCPVLIMHCRYDRVVPAEHAFHAKKLIPFSEVYQA
HHCCCCEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHCC
DSWGHLIWLGTEGKSVSQKVISFLKTTSS
CCCCCEEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 2-hydroxy-6-ketononadienedicarboxylate; H2O [C]

Specific reaction: 2-hydroxy-6-ketononadienedicarboxylate + H2O = 2-oxopent-4-enoate + succinate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]