Click here to switch to the map view.

The map label for this gene is rbfA

Identifier: 52785649

GI number: 52785649

Start: 1849270

End: 1849623

Strand: Direct

Name: rbfA

Synonym: BLi01890

Alternate gene names: 52785649

Gene position: 1849270-1849623 (Clockwise)

Preceding gene: 52785648

Following gene: 52785650

Centisome position: 43.79

GC content: 43.5

Gene sequence:

>354_bases
ATGACGATGAGAGCTACCCGTGTGGGAGAGCAGATGAAAAAAGAACTTGGTGACATTATCGGCAGAAAGCTGAAAGATCC
GCGAATCGGATTTTTAACAGTCACCGACGTCAGGGTCTCAGGTGATTTGCAAATTGCCAAAGTGTATATTTCCGTTTTAG
GCGATGAAAAGAAACGGGAAGAAACGCTCAAAGGCCTGGCAAAAGCAAAGGGCTTTATTCGTTCCGAACTTGGAAACCGA
ATCAGGCTTCGCAAAACACCTGAAATCCATTTTGAGTTCGATGAATCGATCGATTACGGAAACCGTATCGAAACATTGAT
TCACGAGCTGAACGCAAACAAAGAAGAATCATAA

Upstream 100 bases:

>100_bases
AAAAGAGCTGCAGCGGGTCCTCGCCTTTATTGACTCTTTTCCGGAAATTGAACGGACGATCACGAGAACAGAGTGGTTTT
AACGTAGAGGTGGTATGGTC

Downstream 100 bases:

>100_bases
GCTGAAAAAGGATAGGCGGGCGACTGCCTGTCCTTTTTAGCTCCAAATGAGAAAGGGGCGAAGAAGCACGAATGTATAAC
GGAGTCCTTCTATTACATAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MTMRATRVGEQMKKELGDIIGRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKREETLKGLAKAKGFIRSELGNR
IRLRKTPEIHFEFDESIDYGNRIETLIHELNANKEES

Sequences:

>Translated_117_residues
MTMRATRVGEQMKKELGDIIGRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKREETLKGLAKAKGFIRSELGNR
IRLRKTPEIHFEFDESIDYGNRIETLIHELNANKEES
>Mature_116_residues
TMRATRVGEQMKKELGDIIGRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKREETLKGLAKAKGFIRSELGNRI
RLRKTPEIHFEFDESIDYGNRIETLIHELNANKEES

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=42.2413793103448, Blast_Score=88, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_BACLD (Q65JH9)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_079063.1
- RefSeq:   YP_091478.1
- ProteinModelPortal:   Q65JH9
- SMR:   Q65JH9
- STRING:   Q65JH9
- EnsemblBacteria:   EBBACT00000057682
- EnsemblBacteria:   EBBACT00000058839
- GeneID:   3031087
- GeneID:   3100406
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi01890
- KEGG:   bli:BL01221
- NMPDR:   fig|279010.5.peg.2594
- eggNOG:   COG0858
- GeneTree:   EBGT00050000000796
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   BLIC279010-1:BLI01890-MONOMER
- BioCyc:   BLIC279010:BL01221-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13402; Mature: 13270

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMRATRVGEQMKKELGDIIGRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKRE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCHHHH
ETLKGLAKAKGFIRSELGNRIRLRKTPEIHFEFDESIDYGNRIETLIHELNANKEES
HHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TMRATRVGEQMKKELGDIIGRKLKDPRIGFLTVTDVRVSGDLQIAKVYISVLGDEKKRE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCHHHH
ETLKGLAKAKGFIRSELGNRIRLRKTPEIHFEFDESIDYGNRIETLIHELNANKEES
HHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA