Click here to switch to the map view.

The map label for this gene is fliR [H]

Identifier: 52785617

GI number: 52785617

Start: 1811012

End: 1811788

Strand: Direct

Name: fliR [H]

Synonym: BLi01858

Alternate gene names: 52785617

Gene position: 1811012-1811788 (Clockwise)

Preceding gene: 52785616

Following gene: 52785618

Centisome position: 42.89

GC content: 45.95

Gene sequence:

>777_bases
ATGTCAATAATCGAATCATTTCCAGCCTTTTTACTTGTGTTTGTCAGAATCACAGCATTCTATGTAACGGTGCCTCTATT
TTCTTATCGGACAATTCCGGCCGTTCATAAAATAGGTTTTGCATTTTTTCTTGCGCTCGTCAGTTTTCAAGCGATTGAAA
AGCCTCCTCACCTTGACGTTGACGGAATTTACATGATGTTGGCCATGAAGGAAGCGCTCATCGGACTTCTGCTTGGGCTG
ATCGCTTACATGATGATCTCAGCCGTTCAAATCGCCGGATCGTTCATTGATTTTCAAATGGGATTTGCGGTGGCGAATGT
GATCGATCCACAGACAGGGGCGCAAAGCCCGCTTGTCGGCCAGTTTTTATATACGATGGCGCTGCTTCTCATGCTGAGCC
TGAATGCGCATCATCTCCTGCTTGACGGGATCTATTACAGCTATCAATACATTCCGGTCGACAAGATGGCGCTGTCGTTT
GGAAGCGAAGAATTTGCCGAGTTTATCGCAAAAAGCTTCAATACGATGTTTATTACAGCATTTCAATTGTCTGCGCCTGT
TGTGGCTTGTTTGTTTTTAGTCGATCTGGCATTGGGGATTGTGGCGAGAACGGTGCCGCAGCTCAACGTGTTTGTCGTCG
GGCTTCCTTTGAAAATCGCGATCACCTTTATCATGCTCATCATCTGCATGGCCGTTATGTTCAGCATGATGCAGCACGTC
TTCGAATTTGCCATTCGGACAATGAGAGATCTATTAACTTTGCTTGGGGTGGCATGA

Upstream 100 bases:

>100_bases
GTCGGACTCGTCGTTTTCGGCCCGTGGATGCTGTCGACGATTTTGTCATTCGCGACTGAGCTGTTCTCTAATTTAAACCG
TTTTGCAGGGTAGTTTTAAC

Downstream 100 bases:

>100_bases
TGAAGCTGACGTTGGATTTGCAATTTTTCGCAGGTGAAAAAACGGAAAAAGCGACGCCGAAAAAACGGCGGGAAAGCAGA
AAAAAAGGTCAGGTTGCCAA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSIIESFPAFLLVFVRITAFYVTVPLFSYRTIPAVHKIGFAFFLALVSFQAIEKPPHLDVDGIYMMLAMKEALIGLLLGL
IAYMMISAVQIAGSFIDFQMGFAVANVIDPQTGAQSPLVGQFLYTMALLLMLSLNAHHLLLDGIYYSYQYIPVDKMALSF
GSEEFAEFIAKSFNTMFITAFQLSAPVVACLFLVDLALGIVARTVPQLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHV
FEFAIRTMRDLLTLLGVA

Sequences:

>Translated_258_residues
MSIIESFPAFLLVFVRITAFYVTVPLFSYRTIPAVHKIGFAFFLALVSFQAIEKPPHLDVDGIYMMLAMKEALIGLLLGL
IAYMMISAVQIAGSFIDFQMGFAVANVIDPQTGAQSPLVGQFLYTMALLLMLSLNAHHLLLDGIYYSYQYIPVDKMALSF
GSEEFAEFIAKSFNTMFITAFQLSAPVVACLFLVDLALGIVARTVPQLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHV
FEFAIRTMRDLLTLLGVA
>Mature_257_residues
SIIESFPAFLLVFVRITAFYVTVPLFSYRTIPAVHKIGFAFFLALVSFQAIEKPPHLDVDGIYMMLAMKEALIGLLLGLI
AYMMISAVQIAGSFIDFQMGFAVANVIDPQTGAQSPLVGQFLYTMALLLMLSLNAHHLLLDGIYYSYQYIPVDKMALSFG
SEEFAEFIAKSFNTMFITAFQLSAPVVACLFLVDLALGIVARTVPQLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHVF
EFAIRTMRDLLTLLGVA

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=242, Percent_Identity=27.6859504132231, Blast_Score=84, Evalue=7e-18,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28602; Mature: 28471

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIIESFPAFLLVFVRITAFYVTVPLFSYRTIPAVHKIGFAFFLALVSFQAIEKPPHLDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
DGIYMMLAMKEALIGLLLGLIAYMMISAVQIAGSFIDFQMGFAVANVIDPQTGAQSPLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
QFLYTMALLLMLSLNAHHLLLDGIYYSYQYIPVDKMALSFGSEEFAEFIAKSFNTMFITA
HHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCHHHHHHHCCHHHHHHHHHHHCCHHHHHH
FQLSAPVVACLFLVDLALGIVARTVPQLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
FEFAIRTMRDLLTLLGVA
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIIESFPAFLLVFVRITAFYVTVPLFSYRTIPAVHKIGFAFFLALVSFQAIEKPPHLDV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
DGIYMMLAMKEALIGLLLGLIAYMMISAVQIAGSFIDFQMGFAVANVIDPQTGAQSPLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
QFLYTMALLLMLSLNAHHLLLDGIYYSYQYIPVDKMALSFGSEEFAEFIAKSFNTMFITA
HHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCHHHHHHHCCHHHHHHHHHHHCCHHHHHH
FQLSAPVVACLFLVDLALGIVARTVPQLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
FEFAIRTMRDLLTLLGVA
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]