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The map label for this gene is rpe [H]

Identifier: 52785559

GI number: 52785559

Start: 1759670

End: 1760326

Strand: Direct

Name: rpe [H]

Synonym: BLi01800

Alternate gene names: 52785559

Gene position: 1759670-1760326 (Clockwise)

Preceding gene: 52785558

Following gene: 52785560

Centisome position: 41.67

GC content: 51.29

Gene sequence:

>657_bases
ATGGTATATGTTGCTCCTTCTATTCTTTCAGCCGATTTTGCCCGTCTAGGGGAGGAAATTCGAGATGTTGAACAAGGCGG
CGCCGATTTCATCCACATCGATGTGATGGACGGCCATTTCGTTCCCAACCTGACCATCGGGCCGCTTGTAGTGGAAGCCG
TCCGCCCGATCACTGAGCTTCCGCTCGACGTTCATTTAATGATCGAAGCGCCTGACCGCTATATACCTGCTTTTGCAAAA
GCGGGCGCCGATATTTTGTCCGTCCATGTTGAAGCATGCCCGCACCTTCACAGGACGATCCAGCTCATCAAAGAGCAAGG
GGTCAAAGCGGGAGTCGTCTTGAATCCGCATACCCCTGTGCAGCAGATCGAGCATGTGCTTGAAGACCTTGATCTCGTAT
TATTGATGACGGTGAATCCGGGCTTCGGCGGACAGTCGTTTATTTCCTCGGTCCTGCCGAAAATCAGGCAGGTCAAGGAG
ATGGCTGAGCAAAAAGGACTTGCCGATCTGCTGATTGAAGTGGACGGTGGCGTCAACAAAAATACGGCAAGACAGTGTAT
TGAAGCGGGAGCGAACCTGCTTGTCGCAGGATCTGCCGTTTATAACGAAAAAGACCGCAAAAAAGCCATTTCCGATATAA
AAGGTGCGCTTGGGTAA

Upstream 100 bases:

>100_bases
CAAACGCGCCGTGGAAAACGGTGAAATCGCCCAGTATCGCTACAACCATTATGTTGAATTTTTAACAGAGATCAAAGATA
GAAAGCCGAGGTATTAAGAT

Downstream 100 bases:

>100_bases
GGTTTCCTGATGAAAGAGAGCCGGCTTTCTGCAGCTGCGCTCTTTTTTTAGGGCGTTCACAGAAAGGATAATGCGATGAA
AACGATCAATATTGTAGCGG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MVYVAPSILSADFARLGEEIRDVEQGGADFIHIDVMDGHFVPNLTIGPLVVEAVRPITELPLDVHLMIEAPDRYIPAFAK
AGADILSVHVEACPHLHRTIQLIKEQGVKAGVVLNPHTPVQQIEHVLEDLDLVLLMTVNPGFGGQSFISSVLPKIRQVKE
MAEQKGLADLLIEVDGGVNKNTARQCIEAGANLLVAGSAVYNEKDRKKAISDIKGALG

Sequences:

>Translated_218_residues
MVYVAPSILSADFARLGEEIRDVEQGGADFIHIDVMDGHFVPNLTIGPLVVEAVRPITELPLDVHLMIEAPDRYIPAFAK
AGADILSVHVEACPHLHRTIQLIKEQGVKAGVVLNPHTPVQQIEHVLEDLDLVLLMTVNPGFGGQSFISSVLPKIRQVKE
MAEQKGLADLLIEVDGGVNKNTARQCIEAGANLLVAGSAVYNEKDRKKAISDIKGALG
>Mature_218_residues
MVYVAPSILSADFARLGEEIRDVEQGGADFIHIDVMDGHFVPNLTIGPLVVEAVRPITELPLDVHLMIEAPDRYIPAFAK
AGADILSVHVEACPHLHRTIQLIKEQGVKAGVVLNPHTPVQQIEHVLEDLDLVLLMTVNPGFGGQSFISSVLPKIRQVKE
MAEQKGLADLLIEVDGGVNKNTARQCIEAGANLLVAGSAVYNEKDRKKAISDIKGALG

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=213, Percent_Identity=39.906103286385, Blast_Score=169, Evalue=1e-42,
Organism=Homo sapiens, GI219879828, Length=210, Percent_Identity=38.5714285714286, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=31.9526627218935, Blast_Score=103, Evalue=1e-22,
Organism=Escherichia coli, GI1789788, Length=216, Percent_Identity=51.3888888888889, Blast_Score=231, Evalue=3e-62,
Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=39.8009950248756, Blast_Score=163, Evalue=9e-42,
Organism=Escherichia coli, GI1790754, Length=208, Percent_Identity=31.25, Blast_Score=104, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17552948, Length=220, Percent_Identity=39.5454545454545, Blast_Score=160, Evalue=6e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=224, Percent_Identity=40.1785714285714, Blast_Score=172, Evalue=5e-44,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=40.5660377358491, Blast_Score=174, Evalue=6e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23517; Mature: 23517

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYVAPSILSADFARLGEEIRDVEQGGADFIHIDVMDGHFVPNLTIGPLVVEAVRPITEL
CEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHC
PLDVHLMIEAPDRYIPAFAKAGADILSVHVEACPHLHRTIQLIKEQGVKAGVVLNPHTPV
CCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCH
QQIEHVLEDLDLVLLMTVNPGFGGQSFISSVLPKIRQVKEMAEQKGLADLLIEVDGGVNK
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCH
NTARQCIEAGANLLVAGSAVYNEKDRKKAISDIKGALG
HHHHHHHHCCCCEEEECHHHHCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVYVAPSILSADFARLGEEIRDVEQGGADFIHIDVMDGHFVPNLTIGPLVVEAVRPITEL
CEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHC
PLDVHLMIEAPDRYIPAFAKAGADILSVHVEACPHLHRTIQLIKEQGVKAGVVLNPHTPV
CCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCH
QQIEHVLEDLDLVLLMTVNPGFGGQSFISSVLPKIRQVKEMAEQKGLADLLIEVDGGVNK
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCH
NTARQCIEAGANLLVAGSAVYNEKDRKKAISDIKGALG
HHHHHHHHCCCCEEEECHHHHCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]