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The map label for this gene is xlyB [H]

Identifier: 52785332

GI number: 52785332

Start: 1537800

End: 1538735

Strand: Direct

Name: xlyB [H]

Synonym: BLi01568

Alternate gene names: 52785332

Gene position: 1537800-1538735 (Clockwise)

Preceding gene: 52785331

Following gene: 52785333

Centisome position: 36.42

GC content: 49.47

Gene sequence:

>936_bases
ATGGCGATTTCAGTCAAGAAAAACCTCGTCGCGTCAAGTAAGTATTCCGTTAAGTGTCCGTATTCAATGGATGCGAAGTA
CATCACGTTTCACAATACGGCGAACGACGCTTCAGCAGCGAATGAAATTGCGTACATGATCCGCAATAACAACCAAGTAT
CGTATCACTTTGCGGTAGACGATAAAGAGGTCGTTCAGGGGATTCCGACAAACCGTAACGCATGGCATTGCGGAGACGAA
AACGGACCCGGCAACCGTTCATCTATCGGCGTCGAGGTTTGCTATTCGAAATCAGGCGGCGCTAAGTATAAAGCGGCCGA
AAAACTTGCGATTAAATTCATCGCTCAGCTATTAACAGAGCGCGGCTGGGGCGTTGATCGCGTTAAGAAGCATCAGGATT
GGAGCGGAAAATACTGCCCGCACCGTGTACTCGATGAGGGGCGTTGGGGTGCGGTAAAAGCGGCCATCGCTGCGGAATTG
AAAGCGCTCGGAGGAAAGTCGTCTAGCCCTGCGAAATCAGCACCGAAAGCATCCGGTAAGACGTATACCGTAAAGAAAGG
CGACACGCTTTCGGAAATCGCGGTTAAAACAGGCGTTAGTGTGGCGAAACTCCAGTCCTATAACGGTATTAAAAATCCGA
ATAAAATCATGGTCGGTCAGGTGCTGAAGCTTACGGGCAGCGTTAGTTCCAAACCGTCCTCTAGCGGTAAGAAATACGTA
TATCTTCCGGCATCTGCCGACTCATGGCGCATCTATCCGACTAACAAAGCGCCGGTCAAGGGGAACGAGTGCGGATTTCT
GCGTCCGAAGAAATTTGGCGGCCTTAAATACGAAATCCTTGCGAATCCCCAAACGGACGTCTATACGATCAAAACGGATC
AGTTCGGAAAAGTGAATATCTACGCGGCGAAATCAACCGGCGCAACTATTAAGTAA

Upstream 100 bases:

>100_bases
ACTCGAAGAGAAATTTCGCGGAAGAGAATAACGCGCCCGTTCGGTGAGAGTCCGGAGGGCTTTTTATATACGCAAAATTA
ACGAAAAGGGAGACGATTAA

Downstream 100 bases:

>100_bases
ACGAAAAGGGAGACGATATAAATGGAAGAAGTATTATTATTTGCGACTGTGTTGGCGCCCATCCTAACGGCGCTTGTTCA
ACTTGTTAAGAAAACGATTA

Product: XlyB

Products: NA

Alternate protein names: Autolysin; Cell wall hydrolase [H]

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MAISVKKNLVASSKYSVKCPYSMDAKYITFHNTANDASAANEIAYMIRNNNQVSYHFAVDDKEVVQGIPTNRNAWHCGDE
NGPGNRSSIGVEVCYSKSGGAKYKAAEKLAIKFIAQLLTERGWGVDRVKKHQDWSGKYCPHRVLDEGRWGAVKAAIAAEL
KALGGKSSSPAKSAPKASGKTYTVKKGDTLSEIAVKTGVSVAKLQSYNGIKNPNKIMVGQVLKLTGSVSSKPSSSGKKYV
YLPASADSWRIYPTNKAPVKGNECGFLRPKKFGGLKYEILANPQTDVYTIKTDQFGKVNIYAAKSTGATIK

Sequences:

>Translated_311_residues
MAISVKKNLVASSKYSVKCPYSMDAKYITFHNTANDASAANEIAYMIRNNNQVSYHFAVDDKEVVQGIPTNRNAWHCGDE
NGPGNRSSIGVEVCYSKSGGAKYKAAEKLAIKFIAQLLTERGWGVDRVKKHQDWSGKYCPHRVLDEGRWGAVKAAIAAEL
KALGGKSSSPAKSAPKASGKTYTVKKGDTLSEIAVKTGVSVAKLQSYNGIKNPNKIMVGQVLKLTGSVSSKPSSSGKKYV
YLPASADSWRIYPTNKAPVKGNECGFLRPKKFGGLKYEILANPQTDVYTIKTDQFGKVNIYAAKSTGATIK
>Mature_310_residues
AISVKKNLVASSKYSVKCPYSMDAKYITFHNTANDASAANEIAYMIRNNNQVSYHFAVDDKEVVQGIPTNRNAWHCGDEN
GPGNRSSIGVEVCYSKSGGAKYKAAEKLAIKFIAQLLTERGWGVDRVKKHQDWSGKYCPHRVLDEGRWGAVKAAIAAELK
ALGGKSSSPAKSAPKASGKTYTVKKGDTLSEIAVKTGVSVAKLQSYNGIKNPNKIMVGQVLKLTGSVSSKPSSSGKKYVY
LPASADSWRIYPTNKAPVKGNECGFLRPKKFGGLKYEILANPQTDVYTIKTDQFGKVNIYAAKSTGATIK

Specific function: Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation [H]

COG id: COG5632

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR002477
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01510 Amidase_2; PF01476 LysM; PF01471 PG_binding_1 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 33645; Mature: 33513

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISVKKNLVASSKYSVKCPYSMDAKYITFHNTANDASAANEIAYMIRNNNQVSYHFAVD
CEEECCCHHEECCCCEEECCCCCCCEEEEEECCCCCCHHHHHEEEEEECCCEEEEEEEEC
DKEVVQGIPTNRNAWHCGDENGPGNRSSIGVEVCYSKSGGAKYKAAEKLAIKFIAQLLTE
CHHHHCCCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
RGWGVDRVKKHQDWSGKYCPHRVLDEGRWGAVKAAIAAELKALGGKSSSPAKSAPKASGK
CCCCHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TYTVKKGDTLSEIAVKTGVSVAKLQSYNGIKNPNKIMVGQVLKLTGSVSSKPSSSGKKYV
EEEEECCCCHHHHHHHCCCCCEEHHHCCCCCCCCEEHHHHHEEHHCCCCCCCCCCCCEEE
YLPASADSWRIYPTNKAPVKGNECGFLRPKKFGGLKYEILANPQTDVYTIKTDQFGKVNI
EEECCCCCEEEEECCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCCEEEEECCCCCEEEE
YAAKSTGATIK
EEECCCCCCCC
>Mature Secondary Structure 
AISVKKNLVASSKYSVKCPYSMDAKYITFHNTANDASAANEIAYMIRNNNQVSYHFAVD
EEECCCHHEECCCCEEECCCCCCCEEEEEECCCCCCHHHHHEEEEEECCCEEEEEEEEC
DKEVVQGIPTNRNAWHCGDENGPGNRSSIGVEVCYSKSGGAKYKAAEKLAIKFIAQLLTE
CHHHHCCCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
RGWGVDRVKKHQDWSGKYCPHRVLDEGRWGAVKAAIAAELKALGGKSSSPAKSAPKASGK
CCCCHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TYTVKKGDTLSEIAVKTGVSVAKLQSYNGIKNPNKIMVGQVLKLTGSVSSKPSSSGKKYV
EEEEECCCCHHHHHHHCCCCCEEHHHCCCCCCCCEEHHHHHEEHHCCCCCCCCCCCCEEE
YLPASADSWRIYPTNKAPVKGNECGFLRPKKFGGLKYEILANPQTDVYTIKTDQFGKVNI
EEECCCCCEEEEECCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCCEEEEECCCCCEEEE
YAAKSTGATIK
EEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]