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The map label for this gene is pel [H]

Identifier: 52785172

GI number: 52785172

Start: 1402784

End: 1404091

Strand: Direct

Name: pel [H]

Synonym: BLi01404

Alternate gene names: 52785172

Gene position: 1402784-1404091 (Clockwise)

Preceding gene: 52785171

Following gene: 52785173

Centisome position: 33.22

GC content: 45.64

Gene sequence:

>1308_bases
ATGAAAAGGTTTTTTAGTGTAATAATTTTAGGCGCCCTGCTGCTGCTCGGGACATCTGCGCCAATCGAAGCGGCAGACTA
CGGACGCGACGTCCTCGGCTCAAAAGACGGCTGGGGCGCTTATGGAAAAGGAACGACCGGAGGCGCTGACGCTTCTTCTG
ATCAGGTATATACGGTCAAAAACCGCAAGCAGCTTGTTGAGGCATTAGGGGGAGACAATAAAAAGAACAGCGAAAATGAT
ACGCCGAAGATCATCTATGTGAAGGGAACAATCAATCTTAGTGTTGATGATGACAACAATCCTTTAGGCTATGAAGATTA
TAAAGACCCCGAATATTCGATCGAAGCGTATCTCAAAGCTTATGATCCGAAGAAATGGGGGAAAAAGGAGCCGACAGGAA
AGCTTGAAGAGGCAAGGCTCCGCTCGAAAGATAATCAAAAGGAACGGGTCTTGATCAGAGTCGGTTCGAACACAACGATT
ATCGGGCTCGGAGATGATGCGAAAATCGTCGGCGGAGGCCTTTATGTCAAAAACGCGGAAAACGTCATTATCCGCAATAT
CGAATTCGAAAACGCGTACGATTTCTTCCCTGGCTGGGATCCGACGGATGGGAGCAGCGGTAACTGGAATTCAGAATATG
ACAACCTGCTGATCGAAATGTCCAAAAATATTTGGATCGACCACTGCTCATTCAATGACGGAGATCAGCCTGATGAGCTG
ACTGAAACGCATTTCGGGCGCGAATTCCAGCATCACGACGGACTGCTTGATATCAAAAAGCAGTCGGATTTCATTACGGT
GTCATACAGCATATTTTCAGGACATTCTAAAAACACGATTATCGGATCAAGCGACAGCTACAAAGCAGACAACGGGCATT
TAAGGGTGACATTCCACCACAATCTCTACGAAAATATAAAAGAGCGGGCACCGCGCGTCCGCTACGGAAAAGTGCACATT
TACAACAACTATTTTAAAAGCACGAAAGACAGCTACAATTATTCATGGGGCGTAGGCTATTCTTCAAAAATTTATGCTGA
GGACAACTACTTTGACCTGCCGGAAGGAACGAAGCCTCAAAAACTGATGAAGGTCTTTAAAGGTGACGCTTTATATGAAA
AAGATACGATCGTAAACAACCAAAAAAGCGTCGCAAAAATTGATGTTGTCAGCACATACAACAAAGCAAACAATGCGTCT
ATTAAAAAATCGGCCGGCTGGAAGCCGACGCTGTTTGAAAAAATCGACGACGCAGAAGATGTGCCGGCAATCGTTGAAGC
GCACGCAGGCGCAGGAAAACTGAAGTAA

Upstream 100 bases:

>100_bases
AAAATGGTGTCACAAAAAATAGGAGGAAAATATGTTGTTTTCTGTATTTTTATAGCATATATTAGTTTTTGTGAAAAAAT
TTTGATGGTAGGTGCAATTG

Downstream 100 bases:

>100_bases
TCAAGCAAAGCGGACATGCAGATGATGTCCGCTTTTTTGTTCAGGTATCTTGCAATGCAAAATAGTGTATGTTATCATTC
GTGTATCTTGTATTGCAAGA

Product: Pel

Products: NA

Alternate protein names: PL [H]

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKRFFSVIILGALLLLGTSAPIEAADYGRDVLGSKDGWGAYGKGTTGGADASSDQVYTVKNRKQLVEALGGDNKKNSEND
TPKIIYVKGTINLSVDDDNNPLGYEDYKDPEYSIEAYLKAYDPKKWGKKEPTGKLEEARLRSKDNQKERVLIRVGSNTTI
IGLGDDAKIVGGGLYVKNAENVIIRNIEFENAYDFFPGWDPTDGSSGNWNSEYDNLLIEMSKNIWIDHCSFNDGDQPDEL
TETHFGREFQHHDGLLDIKKQSDFITVSYSIFSGHSKNTIIGSSDSYKADNGHLRVTFHHNLYENIKERAPRVRYGKVHI
YNNYFKSTKDSYNYSWGVGYSSKIYAEDNYFDLPEGTKPQKLMKVFKGDALYEKDTIVNNQKSVAKIDVVSTYNKANNAS
IKKSAGWKPTLFEKIDDAEDVPAIVEAHAGAGKLK

Sequences:

>Translated_435_residues
MKRFFSVIILGALLLLGTSAPIEAADYGRDVLGSKDGWGAYGKGTTGGADASSDQVYTVKNRKQLVEALGGDNKKNSEND
TPKIIYVKGTINLSVDDDNNPLGYEDYKDPEYSIEAYLKAYDPKKWGKKEPTGKLEEARLRSKDNQKERVLIRVGSNTTI
IGLGDDAKIVGGGLYVKNAENVIIRNIEFENAYDFFPGWDPTDGSSGNWNSEYDNLLIEMSKNIWIDHCSFNDGDQPDEL
TETHFGREFQHHDGLLDIKKQSDFITVSYSIFSGHSKNTIIGSSDSYKADNGHLRVTFHHNLYENIKERAPRVRYGKVHI
YNNYFKSTKDSYNYSWGVGYSSKIYAEDNYFDLPEGTKPQKLMKVFKGDALYEKDTIVNNQKSVAKIDVVSTYNKANNAS
IKKSAGWKPTLFEKIDDAEDVPAIVEAHAGAGKLK
>Mature_435_residues
MKRFFSVIILGALLLLGTSAPIEAADYGRDVLGSKDGWGAYGKGTTGGADASSDQVYTVKNRKQLVEALGGDNKKNSEND
TPKIIYVKGTINLSVDDDNNPLGYEDYKDPEYSIEAYLKAYDPKKWGKKEPTGKLEEARLRSKDNQKERVLIRVGSNTTI
IGLGDDAKIVGGGLYVKNAENVIIRNIEFENAYDFFPGWDPTDGSSGNWNSEYDNLLIEMSKNIWIDHCSFNDGDQPDEL
TETHFGREFQHHDGLLDIKKQSDFITVSYSIFSGHSKNTIIGSSDSYKADNGHLRVTFHHNLYENIKERAPRVRYGKVHI
YNNYFKSTKDSYNYSWGVGYSSKIYAEDNYFDLPEGTKPQKLMKVFKGDALYEKDTIVNNQKSVAKIDVVSTYNKANNAS
IKKSAGWKPTLFEKIDDAEDVPAIVEAHAGAGKLK

Specific function: Produces unsaturated products from polygalacturonate [H]

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002022
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00544 Pec_lyase_C [H]

EC number: =4.2.2.2 [H]

Molecular weight: Translated: 48695; Mature: 48695

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFFSVIILGALLLLGTSAPIEAADYGRDVLGSKDGWGAYGKGTTGGADASSDQVYTVK
CHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEH
NRKQLVEALGGDNKKNSENDTPKIIYVKGTINLSVDDDNNPLGYEDYKDPEYSIEAYLKA
HHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHEEHEEC
YDPKKWGKKEPTGKLEEARLRSKDNQKERVLIRVGSNTTIIGLGDDAKIVGGGLYVKNAE
CCCHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCEEEECEEEEECCC
NVIIRNIEFENAYDFFPGWDPTDGSSGNWNSEYDNLLIEMSKNIWIDHCSFNDGDQPDEL
CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHEEEEECCCEEEEECCCCCCCCCHHH
TETHFGREFQHHDGLLDIKKQSDFITVSYSIFSGHSKNTIIGSSDSYKADNGHLRVTFHH
HHHHCCCCHHHCCCEEEEECCCCEEEEEEEEECCCCCCEEECCCCCCCCCCCEEEEEECC
NLYENIKERAPRVRYGKVHIYNNYFKSTKDSYNYSWGVGYSSKIYAEDNYFDLPEGTKPQ
HHHHHHHHHCCCEEEEEEEEECCHHHCCCCCCCEEEECCCCCEEEECCCEEECCCCCCHH
KLMKVFKGDALYEKDTIVNNQKSVAKIDVVSTYNKANNASIKKSAGWKPTLFEKIDDAED
HHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEECCCCCCCHHHHHCCCCCC
VPAIVEAHAGAGKLK
CCHHHHCCCCCCCCC
>Mature Secondary Structure
MKRFFSVIILGALLLLGTSAPIEAADYGRDVLGSKDGWGAYGKGTTGGADASSDQVYTVK
CHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEH
NRKQLVEALGGDNKKNSENDTPKIIYVKGTINLSVDDDNNPLGYEDYKDPEYSIEAYLKA
HHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHEEHEEC
YDPKKWGKKEPTGKLEEARLRSKDNQKERVLIRVGSNTTIIGLGDDAKIVGGGLYVKNAE
CCCHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCEEEECEEEEECCC
NVIIRNIEFENAYDFFPGWDPTDGSSGNWNSEYDNLLIEMSKNIWIDHCSFNDGDQPDEL
CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHEEEEECCCEEEEECCCCCCCCCHHH
TETHFGREFQHHDGLLDIKKQSDFITVSYSIFSGHSKNTIIGSSDSYKADNGHLRVTFHH
HHHHCCCCHHHCCCEEEEECCCCEEEEEEEEECCCCCCEEECCCCCCCCCCCEEEEEECC
NLYENIKERAPRVRYGKVHIYNNYFKSTKDSYNYSWGVGYSSKIYAEDNYFDLPEGTKPQ
HHHHHHHHHCCCEEEEEEEEECCHHHCCCCCCCEEEECCCCCEEEECCCEEECCCCCCHH
KLMKVFKGDALYEKDTIVNNQKSVAKIDVVSTYNKANNASIKKSAGWKPTLFEKIDDAED
HHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEECCCCCCCHHHHHCCCCCC
VPAIVEAHAGAGKLK
CCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8262178; 9272861; 9384377; 10658653; 2126210; 7634076 [H]