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The map label for this gene is ydfH [H]

Identifier: 52785122

GI number: 52785122

Start: 1345364

End: 1346041

Strand: Direct

Name: ydfH [H]

Synonym: BLi01354

Alternate gene names: 52785122

Gene position: 1345364-1346041 (Clockwise)

Preceding gene: 52785121

Following gene: 52785123

Centisome position: 31.86

GC content: 46.02

Gene sequence:

>678_bases
ATGAAAATGAAACAATTAAACCCGCGTTCTGTCAGAGATCAAATCTATCAGGTGCTGAAGGAAGAAATCATGAAGTTTCG
GCTTGTTCCGGGTGAGCAGATATCGGAAAAAGAGATTTCAGAACGGTATGAAGTCAGCCGCACTCCGGTCAGAGAGGCTT
TTTTGCAGCTGTCGAAGGAAGGGCTTCTCGAAGTCTATCCGCAGAAAGGAACCCGCGTGTCGCTGATCGATCTTGACCTG
GTGGAGGAAGCGAGGTTTATGCGGGAAAAACTGGAAAAGGCTGTAGCTGAACTGGCGTGTGAGGACTTCCCGCAGGAAGC
TATGTTTAAGCTGGAGCAGAATGTGAAGATGCAGGAATTATCGATCGCACAGAAAAATTATGAAAGTTTGTTTGAATTAG
ATGAAGCGTTTCATCAGACGATTTTTGAAGGCTGCGGAAAAGCGAATGTCTGGGCTGCGATTCAGCAGATGAACGTTCCC
TTCCAAAGAATCCGCTTTTTAAGGCTTGCCGCCGATTTTAACTGGAACACCATCCATCAGCAGCACGCGGCATTAACAGA
AGCGATTCGAACAAAACAGAAGGCAAAAGCCAAGGAAATCGCCGAAGAGCATTTGCAGCTGGTCATCGTCGATAAACAGA
TGCTCATTGATGAGTTTCCCGGTTATTTCAAAAAGTAA

Upstream 100 bases:

>100_bases
GGAACTTTTAAAGTTCCTTTATATTTTTTAAAAATTTTCAAAAAATAACTATCCCACAGCCATACTTGTATGGTAGTATG
GCGGAGAGGGGGTGAGAGTC

Downstream 100 bases:

>100_bases
GCGCTTTAAAAGGAGTGGTGATGTGAAAGCTGCGGTGATGACGAAGCCTTATTCGATTGAATTTCACGACATACCGCGTC
CCGAACCGGCCAGCGGTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKMKQLNPRSVRDQIYQVLKEEIMKFRLVPGEQISEKEISERYEVSRTPVREAFLQLSKEGLLEVYPQKGTRVSLIDLDL
VEEARFMREKLEKAVAELACEDFPQEAMFKLEQNVKMQELSIAQKNYESLFELDEAFHQTIFEGCGKANVWAAIQQMNVP
FQRIRFLRLAADFNWNTIHQQHAALTEAIRTKQKAKAKEIAEEHLQLVIVDKQMLIDEFPGYFKK

Sequences:

>Translated_225_residues
MKMKQLNPRSVRDQIYQVLKEEIMKFRLVPGEQISEKEISERYEVSRTPVREAFLQLSKEGLLEVYPQKGTRVSLIDLDL
VEEARFMREKLEKAVAELACEDFPQEAMFKLEQNVKMQELSIAQKNYESLFELDEAFHQTIFEGCGKANVWAAIQQMNVP
FQRIRFLRLAADFNWNTIHQQHAALTEAIRTKQKAKAKEIAEEHLQLVIVDKQMLIDEFPGYFKK
>Mature_225_residues
MKMKQLNPRSVRDQIYQVLKEEIMKFRLVPGEQISEKEISERYEVSRTPVREAFLQLSKEGLLEVYPQKGTRVSLIDLDL
VEEARFMREKLEKAVAELACEDFPQEAMFKLEQNVKMQELSIAQKNYESLFELDEAFHQTIFEGCGKANVWAAIQQMNVP
FQRIRFLRLAADFNWNTIHQQHAALTEAIRTKQKAKAKEIAEEHLQLVIVDKQMLIDEFPGYFKK

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=203, Percent_Identity=33.0049261083744, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI87082149, Length=203, Percent_Identity=25.615763546798, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26425; Mature: 26425

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKQLNPRSVRDQIYQVLKEEIMKFRLVPGEQISEKEISERYEVSRTPVREAFLQLSKE
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
GLLEVYPQKGTRVSLIDLDLVEEARFMREKLEKAVAELACEDFPQEAMFKLEQNVKMQEL
HHHEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
SIAQKNYESLFELDEAFHQTIFEGCGKANVWAAIQQMNVPFQRIRFLRLAADFNWNTIHQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
QHAALTEAIRTKQKAKAKEIAEEHLQLVIVDKQMLIDEFPGYFKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MKMKQLNPRSVRDQIYQVLKEEIMKFRLVPGEQISEKEISERYEVSRTPVREAFLQLSKE
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
GLLEVYPQKGTRVSLIDLDLVEEARFMREKLEKAVAELACEDFPQEAMFKLEQNVKMQEL
HHHEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
SIAQKNYESLFELDEAFHQTIFEGCGKANVWAAIQQMNVPFQRIRFLRLAADFNWNTIHQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
QHAALTEAIRTKQKAKAKEIAEEHLQLVIVDKQMLIDEFPGYFKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]