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The map label for this gene is yjmC [H]

Identifier: 52784902

GI number: 52784902

Start: 1133396

End: 1134445

Strand: Direct

Name: yjmC [H]

Synonym: BLi01130

Alternate gene names: 52784902

Gene position: 1133396-1134445 (Clockwise)

Preceding gene: 52784901

Following gene: 52784903

Centisome position: 26.84

GC content: 43.14

Gene sequence:

>1050_bases
ATGCGCGTATCTAAGCAGGAGCTGTTTCATTTAATCAAACAGAAGCTGATCAAAGCTGGATTAAACGAAGGAGCCGCACA
CGATGTTTCAGATGTATTGACATTCGCCGATCATAGAGGGATCCATTCCCATGGTGCAGTACGTGTGGAATACTATGCCG
AACGAATCGCAAAAGGCGGTATTACAGCAAACCCAAACTACACATTTGAACAAACAGGACCTGCATCCGCCGTCTTTAGC
GGAGATAATGGCCCAGGTCACCAAGCAGCAAAACAAGCGATGGAAAAAGCAATCGAAATGGCAAAAAATTCAGGTGTTGC
TGTTGTAGGCATGAAGAATATTTCGCATAGTGGTGCATTGGGTTACTTTGTTGAAATGGCAGCAGAACAGGACATGGTTG
CTTTAAGCATGTGCCAATCAGATCCAATGGTCGTACCGTTTGGAGGAACAGAACCATACTTTGGCACCAATCCAATTGCT
TTTAGCGCACCATCGGCTGATGAACGCATGATCACATTTGATATGGCGACAACTGTTCAGGCATGGGGAAAAGTATTGGA
TGCAAGAAGTAAAAATGAATCGATCCCGGAAACATGGGCAGTAGATGCAGCCGGTGCACCAACAACGAATGCAAGAGATG
TCCATGCACTTGTGCCAATTGCCGGTCCAAAAGGTTATGGATTGATGATGATGGTGGATGTCTTATCAGGCAGCCTTCTT
GGAGTACCTCATGGCGTACATGTATCTTCCATGTATCAAGACCTGACAAAAGGCCGAGATTTAGGGCAAATTCATATTGT
GATCAACCCTGCATACTTCACAGATTTAACTGCTTTTAAACAACAGATTTCGACGATGCTTGATGAATTAAAAGCACAAC
CGGCAGCAGAAGGCTATGGGGAAATTTATTATCCGGGTGAGCGCGGTAAATTAAGAAGTGCAAAATATGATAAAGAAGGA
ATTGAAATTGTAGACGATATTTATAACTACCTCGTTTCAGGCGATGTTCATTACAATCGTTATCATGGAAAGAATAGATT
TGCAGAATAA

Upstream 100 bases:

>100_bases
TGAAACAGTATAAAAAAACAGGTATCCCAGTTACAAAGGAAATTTTAGATTATTTAGAGTCAGACAAAATTTACTAATCA
TGTAATGAAGGGGGAAGCAG

Downstream 100 bases:

>100_bases
CAAAATGGAGGATCATTATGTTATACACAATTATAAAAGAAAACACCTATCAAGATTCTATCGTGTTAATGCTTTTATCA
AACAAGTTATCTGCAATAGA

Product: YjmC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MRVSKQELFHLIKQKLIKAGLNEGAAHDVSDVLTFADHRGIHSHGAVRVEYYAERIAKGGITANPNYTFEQTGPASAVFS
GDNGPGHQAAKQAMEKAIEMAKNSGVAVVGMKNISHSGALGYFVEMAAEQDMVALSMCQSDPMVVPFGGTEPYFGTNPIA
FSAPSADERMITFDMATTVQAWGKVLDARSKNESIPETWAVDAAGAPTTNARDVHALVPIAGPKGYGLMMMVDVLSGSLL
GVPHGVHVSSMYQDLTKGRDLGQIHIVINPAYFTDLTAFKQQISTMLDELKAQPAAEGYGEIYYPGERGKLRSAKYDKEG
IEIVDDIYNYLVSGDVHYNRYHGKNRFAE

Sequences:

>Translated_349_residues
MRVSKQELFHLIKQKLIKAGLNEGAAHDVSDVLTFADHRGIHSHGAVRVEYYAERIAKGGITANPNYTFEQTGPASAVFS
GDNGPGHQAAKQAMEKAIEMAKNSGVAVVGMKNISHSGALGYFVEMAAEQDMVALSMCQSDPMVVPFGGTEPYFGTNPIA
FSAPSADERMITFDMATTVQAWGKVLDARSKNESIPETWAVDAAGAPTTNARDVHALVPIAGPKGYGLMMMVDVLSGSLL
GVPHGVHVSSMYQDLTKGRDLGQIHIVINPAYFTDLTAFKQQISTMLDELKAQPAAEGYGEIYYPGERGKLRSAKYDKEG
IEIVDDIYNYLVSGDVHYNRYHGKNRFAE
>Mature_349_residues
MRVSKQELFHLIKQKLIKAGLNEGAAHDVSDVLTFADHRGIHSHGAVRVEYYAERIAKGGITANPNYTFEQTGPASAVFS
GDNGPGHQAAKQAMEKAIEMAKNSGVAVVGMKNISHSGALGYFVEMAAEQDMVALSMCQSDPMVVPFGGTEPYFGTNPIA
FSAPSADERMITFDMATTVQAWGKVLDARSKNESIPETWAVDAAGAPTTNARDVHALVPIAGPKGYGLMMMVDVLSGSLL
GVPHGVHVSSMYQDLTKGRDLGQIHIVINPAYFTDLTAFKQQISTMLDELKAQPAAEGYGEIYYPGERGKLRSAKYDKEG
IEIVDDIYNYLVSGDVHYNRYHGKNRFAE

Specific function: Involved in the anaerobic utilization of allantoin [H]

COG id: COG2055

COG function: function code C; Malate/L-lactate dehydrogenases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LDH2/MDH2 oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1786727, Length=349, Percent_Identity=57.8796561604584, Blast_Score=425, Evalue=1e-120,
Organism=Escherichia coli, GI1787020, Length=334, Percent_Identity=29.6407185628743, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1790000, Length=331, Percent_Identity=22.3564954682779, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17507179, Length=301, Percent_Identity=30.2325581395349, Blast_Score=140, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17536633, Length=342, Percent_Identity=28.3625730994152, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24667904, Length=301, Percent_Identity=30.8970099667774, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24667908, Length=301, Percent_Identity=30.8970099667774, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI45553211, Length=301, Percent_Identity=30.8970099667774, Blast_Score=135, Evalue=4e-32,
Organism=Drosophila melanogaster, GI24667912, Length=301, Percent_Identity=30.8970099667774, Blast_Score=135, Evalue=4e-32,
Organism=Drosophila melanogaster, GI24658010, Length=310, Percent_Identity=26.4516129032258, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24648360, Length=259, Percent_Identity=27.4131274131274, Blast_Score=98, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003767
- InterPro:   IPR017590 [H]

Pfam domain/function: PF02615 Ldh_2 [H]

EC number: =1.1.1.154 [H]

Molecular weight: Translated: 37837; Mature: 37837

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVSKQELFHLIKQKLIKAGLNEGAAHDVSDVLTFADHRGIHSHGAVRVEYYAERIAKGG
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCC
ITANPNYTFEQTGPASAVFSGDNGPGHQAAKQAMEKAIEMAKNSGVAVVGMKNISHSGAL
CCCCCCEEECCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHH
GYFVEMAAEQDMVALSMCQSDPMVVPFGGTEPYFGTNPIAFSAPSADERMITFDMATTVQ
HHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCEEEEEHHHHHHH
AWGKVLDARSKNESIPETWAVDAAGAPTTNARDVHALVPIAGPKGYGLMMMVDVLSGSLL
HHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEE
GVPHGVHVSSMYQDLTKGRDLGQIHIVINPAYFTDLTAFKQQISTMLDELKAQPAAEGYG
CCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EIYYPGERGKLRSAKYDKEGIEIVDDIYNYLVSGDVHYNRYHGKNRFAE
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MRVSKQELFHLIKQKLIKAGLNEGAAHDVSDVLTFADHRGIHSHGAVRVEYYAERIAKGG
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCC
ITANPNYTFEQTGPASAVFSGDNGPGHQAAKQAMEKAIEMAKNSGVAVVGMKNISHSGAL
CCCCCCEEECCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHH
GYFVEMAAEQDMVALSMCQSDPMVVPFGGTEPYFGTNPIAFSAPSADERMITFDMATTVQ
HHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCEEEEEHHHHHHH
AWGKVLDARSKNESIPETWAVDAAGAPTTNARDVHALVPIAGPKGYGLMMMVDVLSGSLL
HHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEE
GVPHGVHVSSMYQDLTKGRDLGQIHIVINPAYFTDLTAFKQQISTMLDELKAQPAAEGYG
CCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
EIYYPGERGKLRSAKYDKEGIEIVDDIYNYLVSGDVHYNRYHGKNRFAE
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]