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The map label for this gene is ydeD [H]

Identifier: 52784882

GI number: 52784882

Start: 1110486

End: 1111415

Strand: Direct

Name: ydeD [H]

Synonym: BLi01110

Alternate gene names: 52784882

Gene position: 1110486-1111415 (Clockwise)

Preceding gene: 52784880

Following gene: 52784883

Centisome position: 26.3

GC content: 48.82

Gene sequence:

>930_bases
ATGAAATCAGCTCATGTGAAAGGCGTATTGATGGTGCTGGCAGGGGCTTCGTTGTGGGGATTATCGGGGAGCGCTGCACA
GTTTGTATTTGAAAGGGGAGCGGCTGATGCCGGCTCGCTTGTCTCCGTCAGGCTTCTGGCGTCGGGCGTCATTCTCTTGC
TATATGTTTCAATGAAAAACGGATTTCAACATGTGTGTCAGATATGGAAGAAAAAAACAGATATTTGTTCGATTTTGGTA
TTTTCCATTTTTGGAATGCTGGCCGTCCAATATACATTTTTTGCCTCAATCGAAAAGGGAAATGCCGCTGCTGCTGCAAT
TCTTCAATATTTGGCGCCTTTTTTCGTATTGTTTTACCTATATGTTAAAAAAGAACTTCCGCCTAAGTGGAAAGATGCCG
TGCTTACTTTATTGGCGCTTTCCGGCGTGTTTCTTCTTTTGACAGGCGGAAGACCGGACAGTTTGTATATTCCGGCCGAG
GCCGCCGTTTGGGGCGTTTTGTCCGGTGGTGCGCTTGCTTTCTATACGGTTTTTGCAGGAGGTTTAATTCAATCGTTCGG
TGCCTTGACGGTTACGGGATGGGGAATGCTCGTCGGAGGGGCCGGTTTTTCTTTTTTGTTTCCGCCGTTTCGGTTTAACC
TTTCGCACATTGGGGCAGGAGAGGCGGCAGCCATTCTGTTTGTTGTATTGTGCGGCACAGCTTTGGCGTTTGCACTATAC
ATTGGCAGTCTCTCTTATCTTTCCGCAAAAGAAACGAGCTGTCTGAGCTGCGCCGAACCGCTTGCGGCCGTTCTGTCGTC
GGCGCTCTGGCTGGGTGTGCCCTTCAATGCCTTTCAAGGAGCCGGTACGGTGATGGTGATCATTACGGTCATCATCCTTT
CCCTCAGCAGAGAAAGAAAAGCAGCAGATTCTGTCAATGAAAGGGTGTAG

Upstream 100 bases:

>100_bases
CATTTATTTTATGAGATCATTTTTTGCCGAAGGAGGTTGCGGCCTAGTCGATCATCTATTAAAATATGCAATATATCGCA
TACAGAAACGGGTGTAAGAT

Downstream 100 bases:

>100_bases
AAAGGAGAGGGAGGCTCCTTTCTTTTTTAAAATGATAATGATTATCATTGTCATTGATGGAGGGAGTTGCTATAATAAGC
TCGTCTACTACAAAAAAGGA

Product: YdeD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKSAHVKGVLMVLAGASLWGLSGSAAQFVFERGAADAGSLVSVRLLASGVILLLYVSMKNGFQHVCQIWKKKTDICSILV
FSIFGMLAVQYTFFASIEKGNAAAAAILQYLAPFFVLFYLYVKKELPPKWKDAVLTLLALSGVFLLLTGGRPDSLYIPAE
AAVWGVLSGGALAFYTVFAGGLIQSFGALTVTGWGMLVGGAGFSFLFPPFRFNLSHIGAGEAAAILFVVLCGTALAFALY
IGSLSYLSAKETSCLSCAEPLAAVLSSALWLGVPFNAFQGAGTVMVIITVIILSLSRERKAADSVNERV

Sequences:

>Translated_309_residues
MKSAHVKGVLMVLAGASLWGLSGSAAQFVFERGAADAGSLVSVRLLASGVILLLYVSMKNGFQHVCQIWKKKTDICSILV
FSIFGMLAVQYTFFASIEKGNAAAAAILQYLAPFFVLFYLYVKKELPPKWKDAVLTLLALSGVFLLLTGGRPDSLYIPAE
AAVWGVLSGGALAFYTVFAGGLIQSFGALTVTGWGMLVGGAGFSFLFPPFRFNLSHIGAGEAAAILFVVLCGTALAFALY
IGSLSYLSAKETSCLSCAEPLAAVLSSALWLGVPFNAFQGAGTVMVIITVIILSLSRERKAADSVNERV
>Mature_309_residues
MKSAHVKGVLMVLAGASLWGLSGSAAQFVFERGAADAGSLVSVRLLASGVILLLYVSMKNGFQHVCQIWKKKTDICSILV
FSIFGMLAVQYTFFASIEKGNAAAAAILQYLAPFFVLFYLYVKKELPPKWKDAVLTLLALSGVFLLLTGGRPDSLYIPAE
AAVWGVLSGGALAFYTVFAGGLIQSFGALTVTGWGMLVGGAGFSFLFPPFRFNLSHIGAGEAAAILFVVLCGTALAFALY
IGSLSYLSAKETSCLSCAEPLAAVLSSALWLGVPFNAFQGAGTVMVIITVIILSLSRERKAADSVNERV

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=298, Percent_Identity=37.5838926174497, Blast_Score=164, Evalue=6e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32608; Mature: 32608

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSAHVKGVLMVLAGASLWGLSGSAAQFVFERGAADAGSLVSVRLLASGVILLLYVSMKN
CCCCHHHHHHHHHHCCHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GFQHVCQIWKKKTDICSILVFSIFGMLAVQYTFFASIEKGNAAAAAILQYLAPFFVLFYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YVKKELPPKWKDAVLTLLALSGVFLLLTGGRPDSLYIPAEAAVWGVLSGGALAFYTVFAG
HHHHCCCCHHHHHHHHHHHHHCHHEEEECCCCCCEEECHHHHHHHHHCCCHHHHHHHHHH
GLIQSFGALTVTGWGMLVGGAGFSFLFPPFRFNLSHIGAGEAAAILFVVLCGTALAFALY
HHHHHCCCCEEECHHHHCCCCCCHHCCCCHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
IGSLSYLSAKETSCLSCAEPLAAVLSSALWLGVPFNAFQGAGTVMVIITVIILSLSRERK
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHH
AADSVNERV
HHHHHHCCC
>Mature Secondary Structure
MKSAHVKGVLMVLAGASLWGLSGSAAQFVFERGAADAGSLVSVRLLASGVILLLYVSMKN
CCCCHHHHHHHHHHCCHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GFQHVCQIWKKKTDICSILVFSIFGMLAVQYTFFASIEKGNAAAAAILQYLAPFFVLFYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YVKKELPPKWKDAVLTLLALSGVFLLLTGGRPDSLYIPAEAAVWGVLSGGALAFYTVFAG
HHHHCCCCHHHHHHHHHHHHHCHHEEEECCCCCCEEECHHHHHHHHHCCCHHHHHHHHHH
GLIQSFGALTVTGWGMLVGGAGFSFLFPPFRFNLSHIGAGEAAAILFVVLCGTALAFALY
HHHHHCCCCEEECHHHHCCCCCCHHCCCCHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
IGSLSYLSAKETSCLSCAEPLAAVLSSALWLGVPFNAFQGAGTVMVIITVIILSLSRERK
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHH
AADSVNERV
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]