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The map label for this gene is yhdW [H]

Identifier: 52784806

GI number: 52784806

Start: 1034319

End: 1035056

Strand: Reverse

Name: yhdW [H]

Synonym: BLi01034

Alternate gene names: 52784806

Gene position: 1035056-1034319 (Counterclockwise)

Preceding gene: 52784810

Following gene: 52784805

Centisome position: 24.51

GC content: 50.0

Gene sequence:

>738_bases
ATGGAAAGATTTTATCAAGAGGAGCTGACATGTTTGCATATTATCGCACATCGCGGAGCCTCGGCTTACGCCCCAGAAAA
TACGTTTGCCGCTTTTGAAAAAGCGGTGGAGCTCGGGGCTGATTTTATCGAACTCGACATACAGATTACAAAGGATGGAA
AACTTGCCGTCATCCACGATGACAAGGTTGACAGAACGACGAACGGTACCGGTTTCGTTCGCGAGTATACGATGAATGAG
CTCGAACAGCTGGATGCAGGAAGCTGGTTCGGCCCTGAATATCAAGGCGAAAAAATCCCTTCACTTGAAGCTGTTCTGAG
GAAGTATCACAATAAGACGGGCCTTCTCATCGAAATCAAGTCGTCCAAAACCCAGCCCGGAATCGAAAAAGCGGCCGGAC
AACTGATCAGCCGGTATGGCCGTTCAATGAACACAATTGTCCAGTCGTTTGACGCCGGCGCCATGAGGGCGTTTCATCAC
ATGTATCCTTCGATTCAGACTGCCGTTTTGATCAGGCCGAGATTTGGATTGCTGCCGCGCGGCCGGCTGCGGCAAATCGC
TTCGTTTGCCCAATACGTCAGCCTGAAAGCTACGATGATCAGCCCTTTTCTGATCAAATCGATTCACAGCTGTGATTTGA
AGGCGCTGGCTTGGACGGTCAACGGGCAGAAAACGGGAAGCCGCCTCAAAAGCTGGAAAATCGATGGGATCATTACCGAC
TACCCGGATTATTTTTGA

Upstream 100 bases:

>100_bases
GTACCATTTTGCCGAAATTTGTCGCACATCTCTTCCCCCTGCCTTTTGTCCGCTTTAGTCAAAGGATTTACTTGCATCGC
CAAAATCGGGTATCCTTGTG

Downstream 100 bases:

>100_bases
GAAAGAAGGAAGAGTATGAAATCATATGTTGCCGTTTTTATCGGGGGAGCCATCGGATCGCTGCTGCGCTACGCAGTCAA
TCTGCTCGGCGGCACCGCCG

Product: YhdW

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MERFYQEELTCLHIIAHRGASAYAPENTFAAFEKAVELGADFIELDIQITKDGKLAVIHDDKVDRTTNGTGFVREYTMNE
LEQLDAGSWFGPEYQGEKIPSLEAVLRKYHNKTGLLIEIKSSKTQPGIEKAAGQLISRYGRSMNTIVQSFDAGAMRAFHH
MYPSIQTAVLIRPRFGLLPRGRLRQIASFAQYVSLKATMISPFLIKSIHSCDLKALAWTVNGQKTGSRLKSWKIDGIITD
YPDYF

Sequences:

>Translated_245_residues
MERFYQEELTCLHIIAHRGASAYAPENTFAAFEKAVELGADFIELDIQITKDGKLAVIHDDKVDRTTNGTGFVREYTMNE
LEQLDAGSWFGPEYQGEKIPSLEAVLRKYHNKTGLLIEIKSSKTQPGIEKAAGQLISRYGRSMNTIVQSFDAGAMRAFHH
MYPSIQTAVLIRPRFGLLPRGRLRQIASFAQYVSLKATMISPFLIKSIHSCDLKALAWTVNGQKTGSRLKSWKIDGIITD
YPDYF
>Mature_245_residues
MERFYQEELTCLHIIAHRGASAYAPENTFAAFEKAVELGADFIELDIQITKDGKLAVIHDDKVDRTTNGTGFVREYTMNE
LEQLDAGSWFGPEYQGEKIPSLEAVLRKYHNKTGLLIEIKSSKTQPGIEKAAGQLISRYGRSMNTIVQSFDAGAMRAFHH
MYPSIQTAVLIRPRFGLLPRGRLRQIASFAQYVSLKATMISPFLIKSIHSCDLKALAWTVNGQKTGSRLKSWKIDGIITD
YPDYF

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=257, Percent_Identity=28.4046692607004, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI260763876, Length=263, Percent_Identity=25.8555133079848, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI260763878, Length=138, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI284055242, Length=85, Percent_Identity=37.6470588235294, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI260763880, Length=138, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI21361649, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI284055245, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI284055240, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1789858, Length=239, Percent_Identity=28.0334728033473, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1788572, Length=98, Percent_Identity=36.734693877551, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17542344, Length=270, Percent_Identity=29.2592592592593, Blast_Score=90, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27597; Mature: 27597

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERFYQEELTCLHIIAHRGASAYAPENTFAAFEKAVELGADFIELDIQITKDGKLAVIHD
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEC
DKVDRTTNGTGFVREYTMNELEQLDAGSWFGPEYQGEKIPSLEAVLRKYHNKTGLLIEIK
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEE
SSKTQPGIEKAAGQLISRYGRSMNTIVQSFDAGAMRAFHHMYPSIQTAVLIRPRFGLLPR
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCCCCCCCC
GRLRQIASFAQYVSLKATMISPFLIKSIHSCDLKALAWTVNGQKTGSRLKSWKIDGIITD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHEEECEEECC
YPDYF
CCCCC
>Mature Secondary Structure
MERFYQEELTCLHIIAHRGASAYAPENTFAAFEKAVELGADFIELDIQITKDGKLAVIHD
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEC
DKVDRTTNGTGFVREYTMNELEQLDAGSWFGPEYQGEKIPSLEAVLRKYHNKTGLLIEIK
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEE
SSKTQPGIEKAAGQLISRYGRSMNTIVQSFDAGAMRAFHHMYPSIQTAVLIRPRFGLLPR
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCCCCCCCC
GRLRQIASFAQYVSLKATMISPFLIKSIHSCDLKALAWTVNGQKTGSRLKSWKIDGIITD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHEEECEEECC
YPDYF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]