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The map label for this gene is yhdE

Identifier: 52784777

GI number: 52784777

Start: 1006697

End: 1007128

Strand: Reverse

Name: yhdE

Synonym: BLi01005

Alternate gene names: 52784777

Gene position: 1007128-1006697 (Counterclockwise)

Preceding gene: 52784781

Following gene: 52784775

Centisome position: 23.85

GC content: 38.89

Gene sequence:

>432_bases
ATGAAATTAACAAATTATACGGATTACTCATTGAGGGTACTGATTTTTCTAGCAACCAAAAACTCAAACGAGCTTGTCAA
TATTAAAGACATCGCCGATTCTTATTCCATTTCAAAAAACCACCTTATGAAGGTGATTTACGAGCTTGGCAAGCTTGGCT
ACGTTGAAACGATCCGCGGCCGCAACGGCGGGATTCGTCTCGGAAAAGCGCCTGAACTGATTAATATCGGTGAAGTCATA
AGACATACAGAAGATGATTTTAACCTTGTCGAGTGTTTTAACGGAGAAAAAAACCATTGTATACTTTCTCCGATCTGCGG
ATTAAAGCATGTTTTAAACAAAGCCCTTTCCGCCTATTTGGACGTATTGGACCAATACACTCTGCAAGATATTATCATGA
ATCAGGACCATATACGTAAATTATTGAGTTGA

Upstream 100 bases:

>100_bases
CAATGAATGTTTTATATTTTTGTAACAATTTCCGCTCGACCCTCATAATCGAAGGCAAATGTGATAAGATAATGGAAACT
TGTTTGATTGAGGTCATGCG

Downstream 100 bases:

>100_bases
CGAAGGAAACGGTTTCCTTCGTTTTTTTTGCTATAAGGGAAAAATATTGACATTGATGATCGCATTGGTCACCGGATGAA
AATACACCTCGGCGTGCGCC

Product: YhdE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRGRNGGIRLGKAPELINIGEVI
RHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYLDVLDQYTLQDIIMNQDHIRKLLS

Sequences:

>Translated_143_residues
MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRGRNGGIRLGKAPELINIGEVI
RHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYLDVLDQYTLQDIIMNQDHIRKLLS
>Mature_143_residues
MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRGRNGGIRLGKAPELINIGEVI
RHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYLDVLDQYTLQDIIMNQDHIRKLLS

Specific function: Nitric oxide-responsive transcriptional regulator

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790621, Length=142, Percent_Identity=42.2535211267606, Blast_Score=128, Evalue=2e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NSRR_BACLD (Q65M01)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_078208.1
- RefSeq:   YP_090606.1
- ProteinModelPortal:   Q65M01
- SMR:   Q65M01
- STRING:   Q65M01
- EnsemblBacteria:   EBBACT00000057821
- EnsemblBacteria:   EBBACT00000062486
- GeneID:   3029895
- GeneID:   3099982
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi01005
- KEGG:   bli:BL02858
- NMPDR:   fig|279010.5.peg.1679
- eggNOG:   COG1959
- GeneTree:   EBGT00070000032063
- HOGENOM:   HBG725923
- OMA:   ITNSCQF
- ProtClustDB:   CLSK886954
- BioCyc:   BLIC279010-1:BLI01005-MONOMER
- BioCyc:   BLIC279010:BL02858-MONOMER
- GO:   GO:0006350
- InterPro:   IPR000944
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- TIGRFAMs:   TIGR00738

Pfam domain/function: PF02082 Rrf2

EC number: NA

Molecular weight: Translated: 16280; Mature: 16280

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS01332 HTH_RRF2_1; PS51197 HTH_RRF2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRG
CCCCCCCCCEEEEEEEEEECCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCHHEECC
RNGGIRLGKAPELINIGEVIRHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYL
CCCCEEECCCCCEECHHHHHHCCCCCCCHHEECCCCCCCEEECHHHHHHHHHHHHHHHHH
DVLDQYTLQDIIMNQDHIRKLLS
HHHHHHHHHHHHCCHHHHHHHHC
>Mature Secondary Structure
MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRG
CCCCCCCCCEEEEEEEEEECCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCHHEECC
RNGGIRLGKAPELINIGEVIRHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYL
CCCCEEECCCCCEECHHHHHHCCCCCCCHHEECCCCCCCEEECHHHHHHHHHHHHHHHHH
DVLDQYTLQDIIMNQDHIRKLLS
HHHHHHHHHHHHCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA