Click here to switch to the map view.

The map label for this gene is yfjF [C]

Identifier: 52784652

GI number: 52784652

Start: 874078

End: 874404

Strand: Reverse

Name: yfjF [C]

Synonym: BLi00854

Alternate gene names: 52784652

Gene position: 874404-874078 (Counterclockwise)

Preceding gene: 52784656

Following gene: 52784646

Centisome position: 20.71

GC content: 55.05

Gene sequence:

>327_bases
ATGATGATCGCAATCGGTTTATTTTTACTGGCGGGTTTGGCTGAAATCGCGGGCGGCTATCTCGTATGGCTGTGGCTGAG
GGAATCCAAACCATTGTGGTACGGGTTGGCCGGAGGGCTGACTTTAATCATTTACGGCGTCATCCCGGCTTTTCAGGCAT
TTCCATCGTTCGGGCGCGTCTATGCCGCGTACGGGGGCGTATTTATTATTCTGGCTGTGCTTTGGGGGTGGCTGGTCGAC
AAAAAAACCCCCGACCTCTATGATTGGGCCGGGGCTGTGATCTGTTTAGCCGGCGTCAGCGTCATGCTTTGGGCGCCGAG
AGGCTAA

Upstream 100 bases:

>100_bases
TACTCGCGTTCTGTTTATTTTCCCGAAAAACGGGAACTTTCCCGGCCGTTTTATGTCGTGTAGAATAGAGACAATTCACG
TGAATTGGAGTGTGTTGTTG

Downstream 100 bases:

>100_bases
AGGTTATATTTTCGAAGCCGCTTGTAAAATGTGCTTCTTGGAATTCCGGCCAGCTTGGCCGCTTCGGACACATTTCCTTT
CGTTTTTTGCAAAGCTTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MMIAIGLFLLAGLAEIAGGYLVWLWLRESKPLWYGLAGGLTLIIYGVIPAFQAFPSFGRVYAAYGGVFIILAVLWGWLVD
KKTPDLYDWAGAVICLAGVSVMLWAPRG

Sequences:

>Translated_108_residues
MMIAIGLFLLAGLAEIAGGYLVWLWLRESKPLWYGLAGGLTLIIYGVIPAFQAFPSFGRVYAAYGGVFIILAVLWGWLVD
KKTPDLYDWAGAVICLAGVSVMLWAPRG
>Mature_108_residues
MMIAIGLFLLAGLAEIAGGYLVWLWLRESKPLWYGLAGGLTLIIYGVIPAFQAFPSFGRVYAAYGGVFIILAVLWGWLVD
KKTPDLYDWAGAVICLAGVSVMLWAPRG

Specific function: Unknown

COG id: COG1742

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0060 family

Homologues:

Organism=Escherichia coli, GI1787865, Length=97, Percent_Identity=40.2061855670103, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y854_BACLD (Q65MC6)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_078077.3
- RefSeq:   YP_090481.1
- STRING:   Q65MC6
- EnsemblBacteria:   EBBACT00000057848
- EnsemblBacteria:   EBBACT00000061798
- GeneID:   3029706
- GeneID:   3101224
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi00854
- KEGG:   bli:BL03049
- NMPDR:   fig|279010.5.peg.1367
- eggNOG:   COG1742
- GeneTree:   EBGT00050000006272
- HOGENOM:   HBG313568
- ProtClustDB:   PRK02237
- BioCyc:   BLIC279010-1:BLI00854-MONOMER
- BioCyc:   BLIC279010:BL03049-MONOMER
- HAMAP:   MF_00010
- InterPro:   IPR003844

Pfam domain/function: PF02694 UPF0060

EC number: NA

Molecular weight: Translated: 11752; Mature: 11752

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd9a87e0)-; HASH(0xd639798)-; HASH(0xd897ad0)-; HASH(0xdbb5e84)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIAIGLFLLAGLAEIAGGYLVWLWLRESKPLWYGLAGGLTLIIYGVIPAFQAFPSFGRV
CCHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHCHHHHHH
YAAYGGVFIILAVLWGWLVDKKTPDLYDWAGAVICLAGVSVMLWAPRG
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCH
>Mature Secondary Structure
MMIAIGLFLLAGLAEIAGGYLVWLWLRESKPLWYGLAGGLTLIIYGVIPAFQAFPSFGRV
CCHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHCHHHHHH
YAAYGGVFIILAVLWGWLVDKKTPDLYDWAGAVICLAGVSVMLWAPRG
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA