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The map label for this gene is yfkA [H]

Identifier: 52784624

GI number: 52784624

Start: 844672

End: 845793

Strand: Reverse

Name: yfkA [H]

Synonym: BLi00825

Alternate gene names: 52784624

Gene position: 845793-844672 (Counterclockwise)

Preceding gene: 52784628

Following gene: 52784620

Centisome position: 20.03

GC content: 51.16

Gene sequence:

>1122_bases
ATGACAGAAAAAATGCAGGCTCGTCCGATCACCCCGGAATATGATCCGTGGGAAGCCTACATGGACGTTGACCAATTTGG
AGATATACAGCTGACGAACGTTGAATTTACGACGACGACTCTTTGCAATATGCGCTGCGAGCACTGCGCCGTCGGGTATA
CGCTCCAGACGAAGGACCCGGACGCGCTGCCAGTCAGCCTTCTGTTGAAACGGCTTGATGAGATTCCCCGCCTTCGTTCT
TTAAGCATTACGGGCGGCGAGCCGATGCTCTCATTAAAATCTGTAAAGGAATATGTCGTTCCTTTATTAAAATACGCTCA
TGAACGCGGCGTGCGGACGCAGATCAACTCAAACTTGACGCTCGATATCGGCCGCTACGAGCTGATCATCCCCTACCTGG
ATGTGCTTCATATTTCCCACAACTGGGGAACGGTCGAAGACTTTGCAGAAATCGGCTTCGCTATGATGGATAAAAAGCCG
ACGTTTGCACAGCGGGCGCGCTATTTCGAAAAAATGATCGAAAACAGCCGGACGCTTGTTGATGAAGGGGTCATGGTCTC
CGCCGAGACGATGCTCAACAAACGGACGCTTCCTCATATCGAGCATATTCACCGGCAAATTGTCGAAGACATGAAATGCC
AGCGCCATGAGGTCCATCCGATGTATCCGAGCGACTTTGCAAGCGCACTTGAATCTTTAAGCTTAAAAGACATGAGAAAA
GCGATCCACCGCCTTCTTGACATTCGCGACGAAAATACGTGGATGCTGTTCGGCACTCTGCCGTTTTACGCGTGCAGCCC
TGATCCTGAAGATCACGCCCTCTTACAGCGGCTGCGCGAAGCGAAAAACGTCACCGTCAGAAACGACCCTGACGGCAGAT
CGCGCCTGAACGTCAATATTTTTGACGGCAATATCATCGTGACCGATTTCGGAGATACTCCGCCGCTCGGCAACATTCAG
ACAGACAGCCTGCCAAGCGCCTACGCGAAGTGGAGAAAAACAGAGCTTGCCAAAGAACTCAACTGCCACTGCCCGCACGT
CCGGTGCCTCGGACCGAATGTGCTCGTCAAAAACAGCTATTATCAAGATGTTGATTTTACTTCCAGAACAGCAAGAGTAT
GA

Upstream 100 bases:

>100_bases
TTTTTTCAATCATCCATGACTTGCATGCCTCAAGGATCAGGTCTAAAATGAATAGTTGGGCTATATTAGTATGTCCTATC
ATAAAGGAGTTAGATATGTC

Downstream 100 bases:

>100_bases
AAAAAGCAAGCCGCAAAGGCTTGCTTTTTTATTTCGGCTGATGGCTGAGCTGAAAGCCGAATGTCAGGTGATCCTGTACA
GGAATCCAAGCGCCGATTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MTEKMQARPITPEYDPWEAYMDVDQFGDIQLTNVEFTTTTLCNMRCEHCAVGYTLQTKDPDALPVSLLLKRLDEIPRLRS
LSITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLTLDIGRYELIIPYLDVLHISHNWGTVEDFAEIGFAMMDKKP
TFAQRARYFEKMIENSRTLVDEGVMVSAETMLNKRTLPHIEHIHRQIVEDMKCQRHEVHPMYPSDFASALESLSLKDMRK
AIHRLLDIRDENTWMLFGTLPFYACSPDPEDHALLQRLREAKNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDTPPLGNIQ
TDSLPSAYAKWRKTELAKELNCHCPHVRCLGPNVLVKNSYYQDVDFTSRTARV

Sequences:

>Translated_373_residues
MTEKMQARPITPEYDPWEAYMDVDQFGDIQLTNVEFTTTTLCNMRCEHCAVGYTLQTKDPDALPVSLLLKRLDEIPRLRS
LSITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLTLDIGRYELIIPYLDVLHISHNWGTVEDFAEIGFAMMDKKP
TFAQRARYFEKMIENSRTLVDEGVMVSAETMLNKRTLPHIEHIHRQIVEDMKCQRHEVHPMYPSDFASALESLSLKDMRK
AIHRLLDIRDENTWMLFGTLPFYACSPDPEDHALLQRLREAKNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDTPPLGNIQ
TDSLPSAYAKWRKTELAKELNCHCPHVRCLGPNVLVKNSYYQDVDFTSRTARV
>Mature_372_residues
TEKMQARPITPEYDPWEAYMDVDQFGDIQLTNVEFTTTTLCNMRCEHCAVGYTLQTKDPDALPVSLLLKRLDEIPRLRSL
SITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLTLDIGRYELIIPYLDVLHISHNWGTVEDFAEIGFAMMDKKPT
FAQRARYFEKMIENSRTLVDEGVMVSAETMLNKRTLPHIEHIHRQIVEDMKCQRHEVHPMYPSDFASALESLSLKDMRKA
IHRLLDIRDENTWMLFGTLPFYACSPDPEDHALLQRLREAKNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDTPPLGNIQT
DSLPSAYAKWRKTELAKELNCHCPHVRCLGPNVLVKNSYYQDVDFTSRTARV

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197
- InterPro:   IPR014866 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08756 YfkB [H]

EC number: NA

Molecular weight: Translated: 42901; Mature: 42769

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKMQARPITPEYDPWEAYMDVDQFGDIQLTNVEFTTTTLCNMRCEHCAVGYTLQTKDP
CCCCCCCCCCCCCCCCHHHHCCHHHCCCEEEEEEEEEHHHHHHCCHHHEEECEEEECCCC
DALPVSLLLKRLDEIPRLRSLSITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLT
CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEE
LDIGRYELIIPYLDVLHISHNWGTVEDFAEIGFAMMDKKPTFAQRARYFEKMIENSRTLV
EEECCEEEEEEHHEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCH
DEGVMVSAETMLNKRTLPHIEHIHRQIVEDMKCQRHEVHPMYPSDFASALESLSLKDMRK
HCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHH
AIHRLLDIRDENTWMLFGTLPFYACSPDPEDHALLQRLREAKNVTVRNDPDGRSRLNVNI
HHHHHHCCCCCCEEEEEECCCEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCEEEEEE
FDGNIIVTDFGDTPPLGNIQTDSLPSAYAKWRKTELAKELNCHCPHVRCLGPNVLVKNSY
EECEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCC
YQDVDFTSRTARV
CCCCCCCCCCCCC
>Mature Secondary Structure 
TEKMQARPITPEYDPWEAYMDVDQFGDIQLTNVEFTTTTLCNMRCEHCAVGYTLQTKDP
CCCCCCCCCCCCCCCHHHHCCHHHCCCEEEEEEEEEHHHHHHCCHHHEEECEEEECCCC
DALPVSLLLKRLDEIPRLRSLSITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLT
CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEE
LDIGRYELIIPYLDVLHISHNWGTVEDFAEIGFAMMDKKPTFAQRARYFEKMIENSRTLV
EEECCEEEEEEHHEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCH
DEGVMVSAETMLNKRTLPHIEHIHRQIVEDMKCQRHEVHPMYPSDFASALESLSLKDMRK
HCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHH
AIHRLLDIRDENTWMLFGTLPFYACSPDPEDHALLQRLREAKNVTVRNDPDGRSRLNVNI
HHHHHHCCCCCCEEEEEECCCEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCEEEEEE
FDGNIIVTDFGDTPPLGNIQTDSLPSAYAKWRKTELAKELNCHCPHVRCLGPNVLVKNSY
EECEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCC
YQDVDFTSRTARV
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]