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The map label for this gene is ywqM [H]

Identifier: 52784401

GI number: 52784401

Start: 585528

End: 586409

Strand: Direct

Name: ywqM [H]

Synonym: BLi00588

Alternate gene names: 52784401

Gene position: 585528-586409 (Clockwise)

Preceding gene: 52784399

Following gene: 52784402

Centisome position: 13.87

GC content: 42.63

Gene sequence:

>882_bases
ATGGAAATCAGACATTTAATCACGTTTCAGACCATCGTTGAAATGGGAAGTTATACGGGGGCGGCTTCGAAATTAGGCTA
TACTCAATCCACGATCACCACTCATATCCAGGCTCTTGAGCATGAGATCGGCGGGGCTTTATTTACGTATGAAAAAAGGA
ATTTAAAACTGACTCAGTTAGGAAGGGAGTTAATGCCTTTAGCCGAAGAATTGCTGTCAACCCATAATCAGATCAAGAAT
TTGCAGAGCGCTCACGAAGTGAAGGGGGTATTGAAAGTGGCTGCGCCCGAGTCTTTAACCATTTCTAGGCTGGGGCCAAT
AATAAGGGAGTATTCGTTGAAATATCCTCATGTCAAATTGAAACTGAGCAACGGTACATGCGGACAAAACCAAGTCGACT
TATTAAGCGGGAATGTGGATGTCGCTTTAATGGTTTATCCCGAAATCGAGCTGGACAAATGCATTCGCTACACGTTGGCT
GAGGAGAAGATCGTCCTTGTCGGCAGCAGTGAAGGGCCTGAGGATTTAGAAGAATATCAAAAACATTTTTTTATAACGAA
TGAAGAAGACTGCAGCTATCGAACCATGTTTGAAAAATATCTCTTGAAAAACGATATTCATTACTTTCCAACGATGGAGT
TGTGGAGCATCGAAGCAATAAAACAAACGGTCATGAGCGGACTCGGATTTTCTGTTTTGCCTTACATTACGGTGAAAGAC
GAAGTGGAAAGCGGTAAACTGAAAATCCTTCCTCATTCTCAATACCTCGACCCGCTTTATTCCCAGATGCTTATCAAAAA
GAAAAAGTGGCAGCTGCCTGCTGTGGATGCTTTTGCGGATCTGGTATTGCATTCGTTTCGTGAACCTCGATTAATAGGAT
AA

Upstream 100 bases:

>100_bases
GGCAGTTTTTATTGTATGATAATGATAACTATAAATAAAATTGAAATATCAAAATGCATTATTGATTTTTTCGATAGATC
AAGTGTTAAGGAGACATCGA

Downstream 100 bases:

>100_bases
AATGAATAGTGAAAGATTCACTTGAATTCCTTATTTTGCAGATTAGATGTGCTATGATACAAAAAAAGGGCGGGAATACT
TTTGCGCGAATTTGCACCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MEIRHLITFQTIVEMGSYTGAASKLGYTQSTITTHIQALEHEIGGALFTYEKRNLKLTQLGRELMPLAEELLSTHNQIKN
LQSAHEVKGVLKVAAPESLTISRLGPIIREYSLKYPHVKLKLSNGTCGQNQVDLLSGNVDVALMVYPEIELDKCIRYTLA
EEKIVLVGSSEGPEDLEEYQKHFFITNEEDCSYRTMFEKYLLKNDIHYFPTMELWSIEAIKQTVMSGLGFSVLPYITVKD
EVESGKLKILPHSQYLDPLYSQMLIKKKKWQLPAVDAFADLVLHSFREPRLIG

Sequences:

>Translated_293_residues
MEIRHLITFQTIVEMGSYTGAASKLGYTQSTITTHIQALEHEIGGALFTYEKRNLKLTQLGRELMPLAEELLSTHNQIKN
LQSAHEVKGVLKVAAPESLTISRLGPIIREYSLKYPHVKLKLSNGTCGQNQVDLLSGNVDVALMVYPEIELDKCIRYTLA
EEKIVLVGSSEGPEDLEEYQKHFFITNEEDCSYRTMFEKYLLKNDIHYFPTMELWSIEAIKQTVMSGLGFSVLPYITVKD
EVESGKLKILPHSQYLDPLYSQMLIKKKKWQLPAVDAFADLVLHSFREPRLIG
>Mature_293_residues
MEIRHLITFQTIVEMGSYTGAASKLGYTQSTITTHIQALEHEIGGALFTYEKRNLKLTQLGRELMPLAEELLSTHNQIKN
LQSAHEVKGVLKVAAPESLTISRLGPIIREYSLKYPHVKLKLSNGTCGQNQVDLLSGNVDVALMVYPEIELDKCIRYTLA
EEKIVLVGSSEGPEDLEEYQKHFFITNEEDCSYRTMFEKYLLKNDIHYFPTMELWSIEAIKQTVMSGLGFSVLPYITVKD
EVESGKLKILPHSQYLDPLYSQMLIKKKKWQLPAVDAFADLVLHSFREPRLIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=291, Percent_Identity=33.3333333333333, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1787806, Length=237, Percent_Identity=24.0506329113924, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788481, Length=250, Percent_Identity=27.2, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790208, Length=293, Percent_Identity=23.5494880546075, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=26.056338028169, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786401, Length=276, Percent_Identity=23.5507246376812, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693193, Length=260, Percent_Identity=23.8461538461538, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI157672245, Length=290, Percent_Identity=23.7931034482759, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790262, Length=185, Percent_Identity=27.5675675675676, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789173, Length=298, Percent_Identity=24.1610738255034, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33338; Mature: 33338

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRHLITFQTIVEMGSYTGAASKLGYTQSTITTHIQALEHEIGGALFTYEKRNLKLTQL
CCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCEEEEEECCCEEHHHH
GRELMPLAEELLSTHNQIKNLQSAHEVKGVLKVAAPESLTISRLGPIIREYSLKYPHVKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCEEEE
KLSNGTCGQNQVDLLSGNVDVALMVYPEIELDKCIRYTLAEEKIVLVGSSEGPEDLEEYQ
EECCCCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
KHFFITNEEDCSYRTMFEKYLLKNDIHYFPTMELWSIEAIKQTVMSGLGFSVLPYITVKD
HHEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEEC
EVESGKLKILPHSQYLDPLYSQMLIKKKKWQLPAVDAFADLVLHSFREPRLIG
CCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEIRHLITFQTIVEMGSYTGAASKLGYTQSTITTHIQALEHEIGGALFTYEKRNLKLTQL
CCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCEEEEEECCCEEHHHH
GRELMPLAEELLSTHNQIKNLQSAHEVKGVLKVAAPESLTISRLGPIIREYSLKYPHVKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCEEEE
KLSNGTCGQNQVDLLSGNVDVALMVYPEIELDKCIRYTLAEEKIVLVGSSEGPEDLEEYQ
EECCCCCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
KHFFITNEEDCSYRTMFEKYLLKNDIHYFPTMELWSIEAIKQTVMSGLGFSVLPYITVKD
HHEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEEC
EVESGKLKILPHSQYLDPLYSQMLIKKKKWQLPAVDAFADLVLHSFREPRLIG
CCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]