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The map label for this gene is ydcD [H]

Identifier: 52784372

GI number: 52784372

Start: 559182

End: 559469

Strand: Direct

Name: ydcD [H]

Synonym: BLi00552

Alternate gene names: 52784372

Gene position: 559182-559469 (Clockwise)

Preceding gene: 52784371

Following gene: 52784373

Centisome position: 13.24

GC content: 42.01

Gene sequence:

>288_bases
ATGTTTTTGTCTGAATCCAGCGCAACAACTGAAATATTGATTCGCTTGCCAGAAGCTTTAGTATCAGAACTGGATGGTGT
CGTCATGCAAGATAACGGGAGCAGAAATGAACTGATTTACCAAGCCACAAAAATGTATTTACGCGAACGCAAAAATCGAC
AAATTCGGGAATCGATGAGACGCGGTTATATGGAGATGGCCAAGATCAATTTGAACATCTCTTCTGAGGCTCAATTTGCA
GAGTATGAGGCTGAAAACACAGTAGAGCGCTTAGTAAGCGGAGGATAA

Upstream 100 bases:

>100_bases
GATGAATTAGCGGAAAAACAACTTTGCTTGCGAAAAGAATAATGATATGATTATGAATGGAATGGATAGAGTGTTGTATC
CGTAAGTTTGGTGGAGGTGT

Downstream 100 bases:

>100_bases
TCATTTGATTGTTAAACGCGGCGATGTTTATTTTGCTGACCTATCTCCTGTTGTTGGCTCAGAACAAGGCGGGGTGCGCC
CGGTTTTAGTGATTCAAAAC

Product: YdcD

Products: NA

Alternate protein names: EndoA inhibitor [H]

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MFLSESSATTEILIRLPEALVSELDGVVMQDNGSRNELIYQATKMYLRERKNRQIRESMRRGYMEMAKINLNISSEAQFA
EYEAENTVERLVSGG

Sequences:

>Translated_95_residues
MFLSESSATTEILIRLPEALVSELDGVVMQDNGSRNELIYQATKMYLRERKNRQIRESMRRGYMEMAKINLNISSEAQFA
EYEAENTVERLVSGG
>Mature_95_residues
MFLSESSATTEILIRLPEALVSELDGVVMQDNGSRNELIYQATKMYLRERKNRQIRESMRRGYMEMAKINLNISSEAQFA
EYEAENTVERLVSGG

Specific function: Part of a toxin-antitoxin (TA) module. Antitoxin that directly inhibits activity of EndoA in vitro [H]

COG id: COG0864

COG function: function code K; Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MazE/EndoAI family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002145 [H]

Pfam domain/function: PF01402 RHH_1 [H]

EC number: NA

Molecular weight: Translated: 10910; Mature: 10910

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLSESSATTEILIRLPEALVSELDGVVMQDNGSRNELIYQATKMYLRERKNRQIRESMR
CCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
RGYMEMAKINLNISSEAQFAEYEAENTVERLVSGG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFLSESSATTEILIRLPEALVSELDGVVMQDNGSRNELIYQATKMYLRERKNRQIRESMR
CCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
RGYMEMAKINLNISSEAQFAEYEAENTVERLVSGG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]