Click here to switch to the map view.

The map label for this gene is ycgP [H]

Identifier: 52784198

GI number: 52784198

Start: 354234

End: 355511

Strand: Direct

Name: ycgP [H]

Synonym: BLi00376

Alternate gene names: 52784198

Gene position: 354234-355511 (Clockwise)

Preceding gene: 52784197

Following gene: 52784201

Centisome position: 8.39

GC content: 43.11

Gene sequence:

>1278_bases
ATGATTAAGTTAAAAACGAGTAGGAGAAAGGATATGGAAGAGCTATTAGAACAAGTTGTTTCTCTTTCAAACATTAATGA
GATCATTGACTTTATCAGCGGGGAGCTGAAAAAGCCGGTCATACTGGAAAGCGCAGATTTTTTCTTATTAGCTTACAACT
CCTATTATATTAACCATTTTGATGCAGCAAACCAGCAAACGATTTTCTCCAAAAAATGTCCGCTGCCGATCTTTGAAAAG
TTCGTCGAAGAAGGCATTATTGATCAATTGAAAACGATTCCGACTCCTTTTCGGGTAAAACAGATTGAAGAAATCGGCTT
AAACCAGCGGGTTGTCGTCAGCGCCAAGCATAAAGACGAAATAATGGGCTATATCTGGGTGCAGGAGATTGAAGACAACC
TGTCTGATGAAGAGCTTGATTTCTTATATCAAGCTTCCTTTCATGTCGGGAAGATCATTTATAAGAAAAAACGCCTCAAA
CAAGAAAAAGAAGAACAGGCGGAAGAGCTTTACAAAAAGGCAATTAACGATCAGTTTCAAACGGAAAAAGAGCTGAAGGC
CGCCGCCGATAAAGCGAACGTCGTCCTGCCGGCCGTGTTTACCGTCATGGTGCTTCAAGTCGTTGACGGGGAGGATGAAC
TGCTCGAAGATCTAAAGGAAACGATCCGGTCTTATTTAAACCTGAAAGACAACATCAGTCACGTACTGGAGGATCATTCG
AATATCGCAATCATTGTCGGCAGTGTGTCGCGCAAGCGTTCCGCGCTGGCCGCTGCCTCAGAACTGATCAACCGTCTGTT
GACCCATCTGCGCTCGCAAATGCTGCCCCTTATTTTGATCGGGGTCGGCAATGAGTACAGCAGCCTGCTCTCCCTCGGCA
AAAGCTACAGAGAGGCGCTCCAAGTGACGAAAGCAGCGGAGATCACGGGAAGCCAAGAACACATTCCCTATGAATATCAA
AAGCTCGGGCTTTTCAAATATCTTGACCAAATCGCCGCAAAAAACGATCATCTGCAATATGTAAACCCGGACCTTCAGCT
GCTGAAAGAAAAAGATAAAGAAAGCCACACCGAATTTTTAAGAACGCTTGAAATCTATCTCGTCAACAATTGCAAGGTCA
AGCCATCCGCAGAACAGCTGTTTATCCACCAAAACACGCTCAACTACCGAATTAAACAAATATTGGAAATGACATCGATT
GATCTCAATGATTTTAATACAAGATGTCAGTTGTTTATCGATTTAATGCTGATGAAGAAAGCAGGCTACAAATCGTAA

Upstream 100 bases:

>100_bases
CGTCTCTCTTTTTATAGGCCTTCTCCCCCTTCTAACAGGGGATTGATCCCATTTTTTTAAAAGTCGCATATAAGTCTATA
CAAGAGTGTAAAGGAGAAGT

Downstream 100 bases:

>100_bases
ACAGAAAAAGAAAAGCCGGTACATGAAGTGCCGGCTTTTAATATGTCCGATAAACGTAAGGATCTTTCGGCTCTTTTATT
GCAGACCAATCCTTCACTTT

Product: YcgP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MIKLKTSRRKDMEELLEQVVSLSNINEIIDFISGELKKPVILESADFFLLAYNSYYINHFDAANQQTIFSKKCPLPIFEK
FVEEGIIDQLKTIPTPFRVKQIEEIGLNQRVVVSAKHKDEIMGYIWVQEIEDNLSDEELDFLYQASFHVGKIIYKKKRLK
QEKEEQAEELYKKAINDQFQTEKELKAAADKANVVLPAVFTVMVLQVVDGEDELLEDLKETIRSYLNLKDNISHVLEDHS
NIAIIVGSVSRKRSALAAASELINRLLTHLRSQMLPLILIGVGNEYSSLLSLGKSYREALQVTKAAEITGSQEHIPYEYQ
KLGLFKYLDQIAAKNDHLQYVNPDLQLLKEKDKESHTEFLRTLEIYLVNNCKVKPSAEQLFIHQNTLNYRIKQILEMTSI
DLNDFNTRCQLFIDLMLMKKAGYKS

Sequences:

>Translated_425_residues
MIKLKTSRRKDMEELLEQVVSLSNINEIIDFISGELKKPVILESADFFLLAYNSYYINHFDAANQQTIFSKKCPLPIFEK
FVEEGIIDQLKTIPTPFRVKQIEEIGLNQRVVVSAKHKDEIMGYIWVQEIEDNLSDEELDFLYQASFHVGKIIYKKKRLK
QEKEEQAEELYKKAINDQFQTEKELKAAADKANVVLPAVFTVMVLQVVDGEDELLEDLKETIRSYLNLKDNISHVLEDHS
NIAIIVGSVSRKRSALAAASELINRLLTHLRSQMLPLILIGVGNEYSSLLSLGKSYREALQVTKAAEITGSQEHIPYEYQ
KLGLFKYLDQIAAKNDHLQYVNPDLQLLKEKDKESHTEFLRTLEIYLVNNCKVKPSAEQLFIHQNTLNYRIKQILEMTSI
DLNDFNTRCQLFIDLMLMKKAGYKS
>Mature_425_residues
MIKLKTSRRKDMEELLEQVVSLSNINEIIDFISGELKKPVILESADFFLLAYNSYYINHFDAANQQTIFSKKCPLPIFEK
FVEEGIIDQLKTIPTPFRVKQIEEIGLNQRVVVSAKHKDEIMGYIWVQEIEDNLSDEELDFLYQASFHVGKIIYKKKRLK
QEKEEQAEELYKKAINDQFQTEKELKAAADKANVVLPAVFTVMVLQVVDGEDELLEDLKETIRSYLNLKDNISHVLEDHS
NIAIIVGSVSRKRSALAAASELINRLLTHLRSQMLPLILIGVGNEYSSLLSLGKSYREALQVTKAAEITGSQEHIPYEYQ
KLGLFKYLDQIAAKNDHLQYVNPDLQLLKEKDKESHTEFLRTLEIYLVNNCKVKPSAEQLFIHQNTLNYRIKQILEMTSI
DLNDFNTRCQLFIDLMLMKKAGYKS

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=141, Percent_Identity=31.2056737588652, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49055; Mature: 49055

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLKTSRRKDMEELLEQVVSLSNINEIIDFISGELKKPVILESADFFLLAYNSYYINHF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCEEEECC
DAANQQTIFSKKCPLPIFEKFVEEGIIDQLKTIPTPFRVKQIEEIGLNQRVVVSAKHKDE
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCHHH
IMGYIWVQEIEDNLSDEELDFLYQASFHVGKIIYKKKRLKQEKEEQAEELYKKAINDQFQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
TEKELKAAADKANVVLPAVFTVMVLQVVDGEDELLEDLKETIRSYLNLKDNISHVLEDHS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
NIAIIVGSVSRKRSALAAASELINRLLTHLRSQMLPLILIGVGNEYSSLLSLGKSYREAL
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH
QVTKAAEITGSQEHIPYEYQKLGLFKYLDQIAAKNDHLQYVNPDLQLLKEKDKESHTEFL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCHHHHHHHH
RTLEIYLVNNCKVKPSAEQLFIHQNTLNYRIKQILEMTSIDLNDFNTRCQLFIDLMLMKK
HHHHHHEEECCCCCCCHHHEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AGYKS
CCCCC
>Mature Secondary Structure
MIKLKTSRRKDMEELLEQVVSLSNINEIIDFISGELKKPVILESADFFLLAYNSYYINHF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCEEEECC
DAANQQTIFSKKCPLPIFEKFVEEGIIDQLKTIPTPFRVKQIEEIGLNQRVVVSAKHKDE
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCHHH
IMGYIWVQEIEDNLSDEELDFLYQASFHVGKIIYKKKRLKQEKEEQAEELYKKAINDQFQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
TEKELKAAADKANVVLPAVFTVMVLQVVDGEDELLEDLKETIRSYLNLKDNISHVLEDHS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
NIAIIVGSVSRKRSALAAASELINRLLTHLRSQMLPLILIGVGNEYSSLLSLGKSYREAL
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH
QVTKAAEITGSQEHIPYEYQKLGLFKYLDQIAAKNDHLQYVNPDLQLLKEKDKESHTEFL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCHHHHHHHH
RTLEIYLVNNCKVKPSAEQLFIHQNTLNYRIKQILEMTSIDLNDFNTRCQLFIDLMLMKK
HHHHHHEEECCCCCCCHHHEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AGYKS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]