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The map label for this gene is ycdC [H]

Identifier: 52784165

GI number: 52784165

Start: 319613

End: 321010

Strand: Direct

Name: ycdC [H]

Synonym: BLi00343

Alternate gene names: 52784165

Gene position: 319613-321010 (Clockwise)

Preceding gene: 52784164

Following gene: 52784167

Centisome position: 7.57

GC content: 48.43

Gene sequence:

>1398_bases
TTGGTTCGTGAACAGTTAAAACAAAAAGCGCAATCCATCAGTAAGGTTCCCCCACATTATCAGCTCATGATCGAAGATTA
CGGAGAGAAGTACGAAAAAGAGAGGCGGGTTTTTTTCGCTTGGCAGGACATTGAAGAGCCGGAGCGGGACATATCGGTGG
AGTTAGATCATCAAGGCCGCTTAATCAGTTTGACAAAAGAGTATGAACCGGTGGTGGAGGAAGCTCTTCCTGATGAAAGG
CTGCTGCAAATCGCCCTTCAGTTTACAGAACAGCATTACCCGAATGCGCCTTATGAATTTGTTTTCCATGAAAAGAAGGT
AACAGAACAATTCGTTCGTTTTACGTATGTTCAGACTGTCCTTGATCTTCCGCTGCCGCAGACGGGCTTTTATGTCCGGG
TCGCCAAGAACGGAGAGGTGATTGAGTTTCGCTATAACGGCGGGACGAGCTCTTTCTCCATTCCAAAGCAGATAGCTGAT
AAGCAATCGGTAACAGCCGATTATCTTGAACATGTTCAATTCGAATTGGCGGTTGAAAAAATCCGCAGTGAACTTTATGA
AGGGGGAGATGATCTCCCGCATCTTATTTACGAAGCAGACTTGCCGTTTTTCAGCTATCCCGCCGATATCACGGAAAAAC
GCCAGATGAAGCCTGCGGCTGATGACGAGGAAGAAGAAGACACATTGCCGCTCCCTGTGCTGCCTGAGGCTGACCGTCAT
GCTGATATCGATGACATGATCGGCTTTACCCCTTCGATGCGAAAAATCCGCGAAACCGATTTGGGAGAGTCAATTGGAAC
AGTGTGGCGCCTGGGAGACGACCCTGAGCCGAGAGATCGGAGTATAGCCGGCTACTTTGAAACATGGAACCAAAATACGT
TGAAAATCGTGAAAGACAAAAACTCGGGGAAGCTCAAAGGAATCGCTTCTTTTATCAAATCGGAAGGACCCCCTGTCTTG
AGCGGGGAAGACTGCTTGAAACGGGCGCTGCAATTTTTGTACAGGCTTTATCCCGACGCTGATCGGCTTTTTCGAATGCA
TCCGGCGGAAAATGACGGGGACAGGTCAAACGCATTTTTTCAATTTGATCTTCAATACAAAGGGGTGCCGTTAAGGCTTG
GCTCTGCCAATATCAGCATCAATCGGACAACCGGCAGGGTCGTCGGTTATCACGGCCCGGAAATCGAGCCGGAAACGCTG
ATCGATCTGAGTCCTTCGCCATCCATTTCAGAGGAGGAAGCGAAAGCCGTTTTTGCAGCGGCATTTGATGTGAAGCTGCA
GTGGGAAAGGGACTACAGTCGGGAAAAGGATGACTTCTACAGGCTTGTCTACCGGCCGGTATACCCTTACTTTATCGATG
CCCATGACGGAAAGGCGTTTATGAGCAAAAACATATAA

Upstream 100 bases:

>100_bases
AGTTCACCAGTTAAATCCAATTATCTCAATTTTCATGAAACGATTGATAGTATATTTCGTATACATAAGGAGAAGAAAAT
GAAAGAGAGGTAGACAGGAT

Downstream 100 bases:

>100_bases
TAAACGGCGGCTGGCTGGGGTGGAAAAGCCCCCGGCCGCCGCCTCTTGTAAGATCAAATATCGTCCTCGGCTCCAGTGGA
GATCGGATGGTCTGGGTAGC

Product: YcdC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MVREQLKQKAQSISKVPPHYQLMIEDYGEKYEKERRVFFAWQDIEEPERDISVELDHQGRLISLTKEYEPVVEEALPDER
LLQIALQFTEQHYPNAPYEFVFHEKKVTEQFVRFTYVQTVLDLPLPQTGFYVRVAKNGEVIEFRYNGGTSSFSIPKQIAD
KQSVTADYLEHVQFELAVEKIRSELYEGGDDLPHLIYEADLPFFSYPADITEKRQMKPAADDEEEEDTLPLPVLPEADRH
ADIDDMIGFTPSMRKIRETDLGESIGTVWRLGDDPEPRDRSIAGYFETWNQNTLKIVKDKNSGKLKGIASFIKSEGPPVL
SGEDCLKRALQFLYRLYPDADRLFRMHPAENDGDRSNAFFQFDLQYKGVPLRLGSANISINRTTGRVVGYHGPEIEPETL
IDLSPSPSISEEEAKAVFAAAFDVKLQWERDYSREKDDFYRLVYRPVYPYFIDAHDGKAFMSKNI

Sequences:

>Translated_465_residues
MVREQLKQKAQSISKVPPHYQLMIEDYGEKYEKERRVFFAWQDIEEPERDISVELDHQGRLISLTKEYEPVVEEALPDER
LLQIALQFTEQHYPNAPYEFVFHEKKVTEQFVRFTYVQTVLDLPLPQTGFYVRVAKNGEVIEFRYNGGTSSFSIPKQIAD
KQSVTADYLEHVQFELAVEKIRSELYEGGDDLPHLIYEADLPFFSYPADITEKRQMKPAADDEEEEDTLPLPVLPEADRH
ADIDDMIGFTPSMRKIRETDLGESIGTVWRLGDDPEPRDRSIAGYFETWNQNTLKIVKDKNSGKLKGIASFIKSEGPPVL
SGEDCLKRALQFLYRLYPDADRLFRMHPAENDGDRSNAFFQFDLQYKGVPLRLGSANISINRTTGRVVGYHGPEIEPETL
IDLSPSPSISEEEAKAVFAAAFDVKLQWERDYSREKDDFYRLVYRPVYPYFIDAHDGKAFMSKNI
>Mature_465_residues
MVREQLKQKAQSISKVPPHYQLMIEDYGEKYEKERRVFFAWQDIEEPERDISVELDHQGRLISLTKEYEPVVEEALPDER
LLQIALQFTEQHYPNAPYEFVFHEKKVTEQFVRFTYVQTVLDLPLPQTGFYVRVAKNGEVIEFRYNGGTSSFSIPKQIAD
KQSVTADYLEHVQFELAVEKIRSELYEGGDDLPHLIYEADLPFFSYPADITEKRQMKPAADDEEEEDTLPLPVLPEADRH
ADIDDMIGFTPSMRKIRETDLGESIGTVWRLGDDPEPRDRSIAGYFETWNQNTLKIVKDKNSGKLKGIASFIKSEGPPVL
SGEDCLKRALQFLYRLYPDADRLFRMHPAENDGDRSNAFFQFDLQYKGVPLRLGSANISINRTTGRVVGYHGPEIEPETL
IDLSPSPSISEEEAKAVFAAAFDVKLQWERDYSREKDDFYRLVYRPVYPYFIDAHDGKAFMSKNI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycdB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53783; Mature: 53783

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVREQLKQKAQSISKVPPHYQLMIEDYGEKYEKERRVFFAWQDIEEPERDISVELDHQGR
CCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEECCCCC
LISLTKEYEPVVEEALPDERLLQIALQFTEQHYPNAPYEFVFHEKKVTEQFVRFTYVQTV
EEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHH
LDLPLPQTGFYVRVAKNGEVIEFRYNGGTSSFSIPKQIADKQSVTADYLEHVQFELAVEK
HHCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IRSELYEGGDDLPHLIYEADLPFFSYPADITEKRQMKPAADDEEEEDTLPLPVLPEADRH
HHHHHHCCCCCCCHHEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
ADIDDMIGFTPSMRKIRETDLGESIGTVWRLGDDPEPRDRSIAGYFETWNQNTLKIVKDK
CCHHHHHCCCHHHHHHHHHHCCHHHHHEEECCCCCCCCCCCEEHHHHHCCCCEEEEEEEC
NSGKLKGIASFIKSEGPPVLSGEDCLKRALQFLYRLYPDADRLFRMHPAENDGDRSNAFF
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCEE
QFDLQYKGVPLRLGSANISINRTTGRVVGYHGPEIEPETLIDLSPSPSISEEEAKAVFAA
EEEEEECCEEEEECCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHEEEEE
AFDVKLQWERDYSREKDDFYRLVYRPVYPYFIDAHDGKAFMSKNI
EEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHCCCC
>Mature Secondary Structure
MVREQLKQKAQSISKVPPHYQLMIEDYGEKYEKERRVFFAWQDIEEPERDISVELDHQGR
CCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEECCCCC
LISLTKEYEPVVEEALPDERLLQIALQFTEQHYPNAPYEFVFHEKKVTEQFVRFTYVQTV
EEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHH
LDLPLPQTGFYVRVAKNGEVIEFRYNGGTSSFSIPKQIADKQSVTADYLEHVQFELAVEK
HHCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IRSELYEGGDDLPHLIYEADLPFFSYPADITEKRQMKPAADDEEEEDTLPLPVLPEADRH
HHHHHHCCCCCCCHHEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
ADIDDMIGFTPSMRKIRETDLGESIGTVWRLGDDPEPRDRSIAGYFETWNQNTLKIVKDK
CCHHHHHCCCHHHHHHHHHHCCHHHHHEEECCCCCCCCCCCEEHHHHHCCCCEEEEEEEC
NSGKLKGIASFIKSEGPPVLSGEDCLKRALQFLYRLYPDADRLFRMHPAENDGDRSNAFF
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCEE
QFDLQYKGVPLRLGSANISINRTTGRVVGYHGPEIEPETLIDLSPSPSISEEEAKAVFAA
EEEEEECCEEEEECCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHEEEEE
AFDVKLQWERDYSREKDDFYRLVYRPVYPYFIDAHDGKAFMSKNI
EEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]