Click here to switch to the map view.

The map label for this gene is ybdO [H]

Identifier: 52784120

GI number: 52784120

Start: 271485

End: 272669

Strand: Direct

Name: ybdO [H]

Synonym: BLi00297

Alternate gene names: 52784120

Gene position: 271485-272669 (Clockwise)

Preceding gene: 52784119

Following gene: 52784121

Centisome position: 6.43

GC content: 43.38

Gene sequence:

>1185_bases
ATGCGTCTCAATAGTCAATACATCCGTACACAGCTGATGGTCCAGAATATATTGAAAAGAAATGCGGCTGATACAACTTT
AAAAAATGTCTCTTCCGATATCACTGCCGTTGCGAAGAAGGCCAGCAGTCAAGCAGGGAGAGCATCGAAAGAAAGTTTGA
GTAAGCTGAACTACTCAAAGGACAGTATTGTGAATCATGCCGGAGCTTTCAGGCGGGCATACGAAGCAGCAAATGATCGA
ACTGTCACAGATACAGGGAAAGAAACGAAGATTAATGCCCAAAACCCCTATGTGTCAGAAAGTGACATCAGGAAAAAAAT
CTTAGATGAAAAATACAGCAAAATAAATGCAATGAACAAAACGAAACCCGACCCTTTAGGCTACATTAAGGATAAATACA
AAAACCCCAATTCCCCTTATTTCAGAAATGACTTGTCGGCAGCAGAAAGACAGGCTGCATATGACAATGAAACTGAGTGG
CTGTTCAAAGGAAAGGCGCAAAGCTATAATATGCAGGATGCCGCGTTTCGAAATGTGACTTTTAATGGGGAAGTAGAGAC
GGAGAATGAGAAAGTATATCAGCGCAGCCAAGTCAACAAACAGCTTCAAGCGCTGCTGGATCAATATCATATTGCCATTC
CAGCGGATGCGGCGCTCACCTTTACGATTACACCGATTGATTATCAAGTAAAGGTAAGCGGAACAGATGATGAGCAACTC
ATCCATCAAATTGAACAAATATTGCAATCAGGAGAAAACAGCAAACAGTTATTTCTGCATATCATGAAAAGCTTGAGCAG
CGATTCGGCACAATATTCCAAAGAAGCGCACCAAAAATATCAGACGGTTCGCGAGATATATGAGGTGACAGGGTATCACC
TGAAAGATTTGGAAGTGGTTGATGGCCGATATGTAACACCTTCCGGCCGTGATTTATTAGAAGTGTATAAAGAAGAGCTG
GAGAAGGATCCCGTCCTCAAGAAAACGGCTCATCTCGCAATCGCTCATTATGGAGCAGAGCTGAACAGGCTTGCGGAAGC
CGAATATGATTCTGTTCCGGATTTCATCTTGTCTATTGACTACAGCAACGGGTCATTGCGGGATACAGGGCAAAAGAAGA
GCTATGGAACCGGGGATACGGCTTGGCTAAGAGAATTAAAGCGCCGAACGGGTGTGAATGATTAG

Upstream 100 bases:

>100_bases
TGCTAAATAGGTTTTCATGTAAATTACTGTTTAATAAGGTTAATATAAACATAATCAAGCCGATATAGGGAGTATAGAAA
GAATTGAGGGGAGGTGCCCA

Downstream 100 bases:

>100_bases
TTTTAAAAGCCAGGAACGAGTTTCCTTTATCAGGGTGATTTTCTTAATAATTGAATTTTTCGTTGCGGGTCTTCCCAACA
CCTGTTAAAATAAGGCTAAC

Product: YbdO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MRLNSQYIRTQLMVQNILKRNAADTTLKNVSSDITAVAKKASSQAGRASKESLSKLNYSKDSIVNHAGAFRRAYEAANDR
TVTDTGKETKINAQNPYVSESDIRKKILDEKYSKINAMNKTKPDPLGYIKDKYKNPNSPYFRNDLSAAERQAAYDNETEW
LFKGKAQSYNMQDAAFRNVTFNGEVETENEKVYQRSQVNKQLQALLDQYHIAIPADAALTFTITPIDYQVKVSGTDDEQL
IHQIEQILQSGENSKQLFLHIMKSLSSDSAQYSKEAHQKYQTVREIYEVTGYHLKDLEVVDGRYVTPSGRDLLEVYKEEL
EKDPVLKKTAHLAIAHYGAELNRLAEAEYDSVPDFILSIDYSNGSLRDTGQKKSYGTGDTAWLRELKRRTGVND

Sequences:

>Translated_394_residues
MRLNSQYIRTQLMVQNILKRNAADTTLKNVSSDITAVAKKASSQAGRASKESLSKLNYSKDSIVNHAGAFRRAYEAANDR
TVTDTGKETKINAQNPYVSESDIRKKILDEKYSKINAMNKTKPDPLGYIKDKYKNPNSPYFRNDLSAAERQAAYDNETEW
LFKGKAQSYNMQDAAFRNVTFNGEVETENEKVYQRSQVNKQLQALLDQYHIAIPADAALTFTITPIDYQVKVSGTDDEQL
IHQIEQILQSGENSKQLFLHIMKSLSSDSAQYSKEAHQKYQTVREIYEVTGYHLKDLEVVDGRYVTPSGRDLLEVYKEEL
EKDPVLKKTAHLAIAHYGAELNRLAEAEYDSVPDFILSIDYSNGSLRDTGQKKSYGTGDTAWLRELKRRTGVND
>Mature_394_residues
MRLNSQYIRTQLMVQNILKRNAADTTLKNVSSDITAVAKKASSQAGRASKESLSKLNYSKDSIVNHAGAFRRAYEAANDR
TVTDTGKETKINAQNPYVSESDIRKKILDEKYSKINAMNKTKPDPLGYIKDKYKNPNSPYFRNDLSAAERQAAYDNETEW
LFKGKAQSYNMQDAAFRNVTFNGEVETENEKVYQRSQVNKQLQALLDQYHIAIPADAALTFTITPIDYQVKVSGTDDEQL
IHQIEQILQSGENSKQLFLHIMKSLSSDSAQYSKEAHQKYQTVREIYEVTGYHLKDLEVVDGRYVTPSGRDLLEVYKEEL
EKDPVLKKTAHLAIAHYGAELNRLAEAEYDSVPDFILSIDYSNGSLRDTGQKKSYGTGDTAWLRELKRRTGVND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44712; Mature: 44712

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNSQYIRTQLMVQNILKRNAADTTLKNVSSDITAVAKKASSQAGRASKESLSKLNYSK
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
DSIVNHAGAFRRAYEAANDRTVTDTGKETKINAQNPYVSESDIRKKILDEKYSKINAMNK
HHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
TKPDPLGYIKDKYKNPNSPYFRNDLSAAERQAAYDNETEWLFKGKAQSYNMQDAAFRNVT
CCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCE
FNGEVETENEKVYQRSQVNKQLQALLDQYHIAIPADAALTFTITPIDYQVKVSGTDDEQL
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEECCCCEEEEEEECCEEEEEECCCCHHHH
IHQIEQILQSGENSKQLFLHIMKSLSSDSAQYSKEAHQKYQTVREIYEVTGYHLKDLEVV
HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
DGRYVTPSGRDLLEVYKEELEKDPVLKKTAHLAIAHYGAELNRLAEAEYDSVPDFILSID
CCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
YSNGSLRDTGQKKSYGTGDTAWLRELKRRTGVND
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLNSQYIRTQLMVQNILKRNAADTTLKNVSSDITAVAKKASSQAGRASKESLSKLNYSK
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
DSIVNHAGAFRRAYEAANDRTVTDTGKETKINAQNPYVSESDIRKKILDEKYSKINAMNK
HHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
TKPDPLGYIKDKYKNPNSPYFRNDLSAAERQAAYDNETEWLFKGKAQSYNMQDAAFRNVT
CCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCE
FNGEVETENEKVYQRSQVNKQLQALLDQYHIAIPADAALTFTITPIDYQVKVSGTDDEQL
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEECCCCEEEEEEECCEEEEEECCCCHHHH
IHQIEQILQSGENSKQLFLHIMKSLSSDSAQYSKEAHQKYQTVREIYEVTGYHLKDLEVV
HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
DGRYVTPSGRDLLEVYKEELEKDPVLKKTAHLAIAHYGAELNRLAEAEYDSVPDFILSID
CCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
YSNGSLRDTGQKKSYGTGDTAWLRELKRRTGVND
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]