Click here to switch to the map view.

The map label for this gene is ybbR [H]

Identifier: 52784030

GI number: 52784030

Start: 180295

End: 181611

Strand: Direct

Name: ybbR [H]

Synonym: BLi00202

Alternate gene names: 52784030

Gene position: 180295-181611 (Clockwise)

Preceding gene: 52784029

Following gene: 52784031

Centisome position: 4.27

GC content: 48.22

Gene sequence:

>1317_bases
ATGGATAAGTTCTTAAACAATCCCTGGGCTGTCAAAGTTGTCGCGTTATTGTTCGCGTTTCTTCTTTACTTTGCGGTCCA
CAGCGCTCAGGCGCCGACTCCGAAGAAACCAGGTGAATCGTTTTTCCCGACATCGACAACAGACGAAGCGACGCTCACCG
ATATACCGGTCAAATCGTTTTATGATGATGAAAACTACGTCGTAACAGGCGTGCCGCAGACGGTGAATGTCACGATTAAA
GGCCCGACCGGAACCGTCAAGAAGGTCAGACAAGTGAAGGATTTTGAGATTTATGCCGACATGCAAAACCTGAAAACAGG
CAGGCATAAAGTCGAGCTGAAGGCCAGAAATGTTGCCGACGGCCTCACTCTGACCATCAATCCATCGGTGACAACCGTGA
CGATCGAAGAAAAAACGACGAAGGAATTCCCGGTCGAGGTTGATTTTTATAATAAAAACAAAATGAAAGACGGCTACACG
CCGGAGCTGCCGATCATCAACCCGAAAAACGTCAGCGTCACCGGCTCAAAAGCCGTGATCGACAGAATCCAGAACATCAA
GGCGACGATCAATTTAGAGGGCGTCGACCAGACGGTTGAAAAAGAAGCCAAGCTTACAGTATACGACAAGGACGGAAATG
TCCTGCCGGTTGAAGTCAGCCCTTCCGTCGTTAAAATCACCGTTCCGGTGACGAGCCCGAGCAAAAAGATTCCGGTCAAA
GTTGACCGGAAAGGCAGCCTTCCGGACGGCATCAGCATTTCCAGCCTCGATATAAGTCCGGGAGAGGTGACCGTCTACGG
GCCGCAAAATGTTCTTGATTCGTTAGAATTTGTCGAGGCCGACGAGATTGATTTAAGTAAAATAAAGGATGATACTGAAT
TGGAAGCCGGCATTAAAGTGCCGGACGGCGCTAAAAAGGTGTCACCCGAAAAAGTGAAAATCAAGGTGAAAGTTGACAAG
GAAGAAGAGAAAAAACTGAAAAACGTTTCAATTAAAACCGCGGGGCTGAATGACAGCCGGGATCTTGAATTTCTCGATCC
GAAGTCAGGCAAGCTGGATATCACGGCAAAGGGCTCGACAGCCGCGATCGAAAAACTCCAGCCTTCCGACGTCGAGCTCT
ATGTCAATGTGGCGGATCTCGATGACGGCGAGCACAATGTAAAGCTGGAAGTAAACGGTCCGCAGAACATGACATGGTCG
CTGCCGCGGCAAAGCATTCGAGTGAAAATCTCATCTCAAACAACCCAAAACGAAAAAAACAATGGTCAGGATGAAGAAGA
AGAGAATCATTCTGAAAAGGATTCACAACCTTCATGA

Upstream 100 bases:

>100_bases
GATTTATCGGAAGAGGCATTGAAAAATATGCTTGAAGCGGAATTTAAGAAAAATTCGCGGGAAACTTCCTCAAATCGCTG
GTATTGGAGGGCGAAGAAAA

Downstream 100 bases:

>100_bases
ATCAAAAAGGAGCGATATTAATGGGCAAGTATTTTGGTACAGACGGTGTAAGAGGCGTGGCAAACAGTGAACTTACACCT
GAGCTGGCCTTTAAAGTCGG

Product: YbbR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MDKFLNNPWAVKVVALLFAFLLYFAVHSAQAPTPKKPGESFFPTSTTDEATLTDIPVKSFYDDENYVVTGVPQTVNVTIK
GPTGTVKKVRQVKDFEIYADMQNLKTGRHKVELKARNVADGLTLTINPSVTTVTIEEKTTKEFPVEVDFYNKNKMKDGYT
PELPIINPKNVSVTGSKAVIDRIQNIKATINLEGVDQTVEKEAKLTVYDKDGNVLPVEVSPSVVKITVPVTSPSKKIPVK
VDRKGSLPDGISISSLDISPGEVTVYGPQNVLDSLEFVEADEIDLSKIKDDTELEAGIKVPDGAKKVSPEKVKIKVKVDK
EEEKKLKNVSIKTAGLNDSRDLEFLDPKSGKLDITAKGSTAAIEKLQPSDVELYVNVADLDDGEHNVKLEVNGPQNMTWS
LPRQSIRVKISSQTTQNEKNNGQDEEEENHSEKDSQPS

Sequences:

>Translated_438_residues
MDKFLNNPWAVKVVALLFAFLLYFAVHSAQAPTPKKPGESFFPTSTTDEATLTDIPVKSFYDDENYVVTGVPQTVNVTIK
GPTGTVKKVRQVKDFEIYADMQNLKTGRHKVELKARNVADGLTLTINPSVTTVTIEEKTTKEFPVEVDFYNKNKMKDGYT
PELPIINPKNVSVTGSKAVIDRIQNIKATINLEGVDQTVEKEAKLTVYDKDGNVLPVEVSPSVVKITVPVTSPSKKIPVK
VDRKGSLPDGISISSLDISPGEVTVYGPQNVLDSLEFVEADEIDLSKIKDDTELEAGIKVPDGAKKVSPEKVKIKVKVDK
EEEKKLKNVSIKTAGLNDSRDLEFLDPKSGKLDITAKGSTAAIEKLQPSDVELYVNVADLDDGEHNVKLEVNGPQNMTWS
LPRQSIRVKISSQTTQNEKNNGQDEEEENHSEKDSQPS
>Mature_438_residues
MDKFLNNPWAVKVVALLFAFLLYFAVHSAQAPTPKKPGESFFPTSTTDEATLTDIPVKSFYDDENYVVTGVPQTVNVTIK
GPTGTVKKVRQVKDFEIYADMQNLKTGRHKVELKARNVADGLTLTINPSVTTVTIEEKTTKEFPVEVDFYNKNKMKDGYT
PELPIINPKNVSVTGSKAVIDRIQNIKATINLEGVDQTVEKEAKLTVYDKDGNVLPVEVSPSVVKITVPVTSPSKKIPVK
VDRKGSLPDGISISSLDISPGEVTVYGPQNVLDSLEFVEADEIDLSKIKDDTELEAGIKVPDGAKKVSPEKVKIKVKVDK
EEEKKLKNVSIKTAGLNDSRDLEFLDPKSGKLDITAKGSTAAIEKLQPSDVELYVNVADLDDGEHNVKLEVNGPQNMTWS
LPRQSIRVKISSQTTQNEKNNGQDEEEENHSEKDSQPS

Specific function: Unknown

COG id: COG4856

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 YbbR-like domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012505 [H]

Pfam domain/function: PF07949 YbbR [H]

EC number: NA

Molecular weight: Translated: 48220; Mature: 48220

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFLNNPWAVKVVALLFAFLLYFAVHSAQAPTPKKPGESFFPTSTTDEATLTDIPVKSF
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHE
YDDENYVVTGVPQTVNVTIKGPTGTVKKVRQVKDFEIYADMQNLKTGRHKVELKARNVAD
ECCCCEEEEECCCEEEEEEECCCCHHHHHHHHHCEEEEEEHHHHCCCCEEEEEEECCCCC
GLTLTINPSVTTVTIEEKTTKEFPVEVDFYNKNKMKDGYTPELPIINPKNVSVTGSKAVI
CEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCEEEECCHHHH
DRIQNIKATINLEGVDQTVEKEAKLTVYDKDGNVLPVEVSPSVVKITVPVTSPSKKIPVK
HHHHCCEEEEEECCCCHHHCCCCEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCEE
VDRKGSLPDGISISSLDISPGEVTVYGPQNVLDSLEFVEADEIDLSKIKDDTELEAGIKV
ECCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHCCCCCCCHHHCCCCCHHCCCCCC
PDGAKKVSPEKVKIKVKVDKEEEKKLKNVSIKTAGLNDSRDLEFLDPKSGKLDITAKGST
CCCCCCCCCCEEEEEEEECCHHHHHHHCCEEEEECCCCCCCEEEECCCCCEEEEEECCCH
AAIEKLQPSDVELYVNVADLDDGEHNVKLEVNGPQNMTWSLPRQSIRVKISSQTTQNEKN
HHHHHCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCEECCCCCEEEEEEECCCCCCCCC
NGQDEEEENHSEKDSQPS
CCCCCHHHCCCCCCCCCC
>Mature Secondary Structure
MDKFLNNPWAVKVVALLFAFLLYFAVHSAQAPTPKKPGESFFPTSTTDEATLTDIPVKSF
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHE
YDDENYVVTGVPQTVNVTIKGPTGTVKKVRQVKDFEIYADMQNLKTGRHKVELKARNVAD
ECCCCEEEEECCCEEEEEEECCCCHHHHHHHHHCEEEEEEHHHHCCCCEEEEEEECCCCC
GLTLTINPSVTTVTIEEKTTKEFPVEVDFYNKNKMKDGYTPELPIINPKNVSVTGSKAVI
CEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCEEEECCHHHH
DRIQNIKATINLEGVDQTVEKEAKLTVYDKDGNVLPVEVSPSVVKITVPVTSPSKKIPVK
HHHHCCEEEEEECCCCHHHCCCCEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCEE
VDRKGSLPDGISISSLDISPGEVTVYGPQNVLDSLEFVEADEIDLSKIKDDTELEAGIKV
ECCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHCCCCCCCHHHCCCCCHHCCCCCC
PDGAKKVSPEKVKIKVKVDKEEEKKLKNVSIKTAGLNDSRDLEFLDPKSGKLDITAKGST
CCCCCCCCCCEEEEEEEECCHHHHHHHCCEEEEECCCCCCCEEEECCCCCEEEEEECCCH
AAIEKLQPSDVELYVNVADLDDGEHNVKLEVNGPQNMTWSLPRQSIRVKISSQTTQNEKN
HHHHHCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCEECCCCCEEEEEEECCCCCCCCC
NGQDEEEENHSEKDSQPS
CCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]