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The map label for this gene is yddE [C]

Identifier: 52784018

GI number: 52784018

Start: 166702

End: 167571

Strand: Reverse

Name: yddE [C]

Synonym: BLi00185

Alternate gene names: 52784018

Gene position: 167571-166702 (Counterclockwise)

Preceding gene: 52784019

Following gene: 52784014

Centisome position: 3.97

GC content: 41.95

Gene sequence:

>870_bases
ATGGATTTTTATCTTGTGGATGTGTTTGCAGAAACAAAATATACAGGAAACCAGCTCGCTGTTTTTAAAGCAGAAAAGAA
CCTATCAAGTGATGAAATGCAAAAAATAGCCAGGGAAATCAATTTTTCCGAGACTACTTTTATATTGGGAAAACAGGGAA
ACGGCGGGTACGATGTCCGAATCTTCACCCCGGAAAAAGAAATTCCGTTTGCAGGACATCCAACGCTGGGCACAGCGTTT
ATCATTAAGAATGAAATCGAAACTGAACCATCTTCTAATGTCATTTTAAATGTAACAGCAGGCGCAATACCGGTGACGTT
TGAAAAAGGTGCTGATCAAATCATTTGGATGAAGCAAAATCCGCCCGTGTTTAACCGAACCTTTGATAAAGAAATGATGG
CGGGGGTAATTGGAATCGACACATCTGATATGGATTCGAATTTCCCGATACAGGAGGTTTCTACAGGGCTTCCAGCGGTT
ATCGTACCGTTAAACTCGTTAAATGCAGTTAAAAAATGCAAAATCAACAAGGATCGGTTTGAAGCTTTCATGAAAGAAAC
AGAAGCAAGTCTGCTCGTTTTTACTACCGAAACATATCATGAACAAAACCACATCAATGCACGAGTATTTTGCGACTGTT
TCAGCGTTCCTGAAGATCCGGCAACAGGAAGCGCAATCGGGGGTCTCGCAGGGTATTTACTGCATCACGGCTATTTTAAT
CAACACTACCTCAGCATAAGGGCTGAACAAGGATTTGAAATAAACCGCCCTTCCCTGCTTCATCTTGAAGCCCAAATAAC
GGAAAACAGCACAGAAATTCACGTCGGGGGAAACGTCCACCTGATCGCTAAAGGAAGTTGGCAAATTTGA

Upstream 100 bases:

>100_bases
GCGGGAGCCGCTCTTCTTTATTTTTGATTAGACTGTTCAATCATTCCCATCTCATGTAAGATATGTGAAACTGCGTCTTA
TTAGAGGGGAGATACTTCAG

Downstream 100 bases:

>100_bases
ACACAACTTTGAATATCAGAAAGAGGCACTTGCTGACGTCCGGCGAAAAGCAACCACTAGCCAAATCACATTCACAATCG
CTAACAGAACGCAAAGACCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MDFYLVDVFAETKYTGNQLAVFKAEKNLSSDEMQKIAREINFSETTFILGKQGNGGYDVRIFTPEKEIPFAGHPTLGTAF
IIKNEIETEPSSNVILNVTAGAIPVTFEKGADQIIWMKQNPPVFNRTFDKEMMAGVIGIDTSDMDSNFPIQEVSTGLPAV
IVPLNSLNAVKKCKINKDRFEAFMKETEASLLVFTTETYHEQNHINARVFCDCFSVPEDPATGSAIGGLAGYLLHHGYFN
QHYLSIRAEQGFEINRPSLLHLEAQITENSTEIHVGGNVHLIAKGSWQI

Sequences:

>Translated_289_residues
MDFYLVDVFAETKYTGNQLAVFKAEKNLSSDEMQKIAREINFSETTFILGKQGNGGYDVRIFTPEKEIPFAGHPTLGTAF
IIKNEIETEPSSNVILNVTAGAIPVTFEKGADQIIWMKQNPPVFNRTFDKEMMAGVIGIDTSDMDSNFPIQEVSTGLPAV
IVPLNSLNAVKKCKINKDRFEAFMKETEASLLVFTTETYHEQNHINARVFCDCFSVPEDPATGSAIGGLAGYLLHHGYFN
QHYLSIRAEQGFEINRPSLLHLEAQITENSTEIHVGGNVHLIAKGSWQI
>Mature_289_residues
MDFYLVDVFAETKYTGNQLAVFKAEKNLSSDEMQKIAREINFSETTFILGKQGNGGYDVRIFTPEKEIPFAGHPTLGTAF
IIKNEIETEPSSNVILNVTAGAIPVTFEKGADQIIWMKQNPPVFNRTFDKEMMAGVIGIDTSDMDSNFPIQEVSTGLPAV
IVPLNSLNAVKKCKINKDRFEAFMKETEASLLVFTTETYHEQNHINARVFCDCFSVPEDPATGSAIGGLAGYLLHHGYFN
QHYLSIRAEQGFEINRPSLLHLEAQITENSTEIHVGGNVHLIAKGSWQI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=293, Percent_Identity=27.3037542662116, Blast_Score=111, Evalue=7e-26,
Organism=Saccharomyces cerevisiae, GI6321818, Length=302, Percent_Identity=28.476821192053, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32125; Mature: 32125

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFYLVDVFAETKYTGNQLAVFKAEKNLSSDEMQKIAREINFSETTFILGKQGNGGYDVR
CCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEE
IFTPEKEIPFAGHPTLGTAFIIKNEIETEPSSNVILNVTAGAIPVTFEKGADQIIWMKQN
EECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEEEECCCCEEEEEECC
PPVFNRTFDKEMMAGVIGIDTSDMDSNFPIQEVSTGLPAVIVPLNSLNAVKKCKINKDRF
CCCCCCCCCHHHHHHEEECCCCCCCCCCCHHHHHCCCCEEEEECCCCCCHHHCCCCHHHH
EAFMKETEASLLVFTTETYHEQNHINARVFCDCFSVPEDPATGSAIGGLAGYLLHHGYFN
HHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
QHYLSIRAEQGFEINRPSLLHLEAQITENSTEIHVGGNVHLIAKGSWQI
CEEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEECCCEEEEECCCCCC
>Mature Secondary Structure
MDFYLVDVFAETKYTGNQLAVFKAEKNLSSDEMQKIAREINFSETTFILGKQGNGGYDVR
CCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEE
IFTPEKEIPFAGHPTLGTAFIIKNEIETEPSSNVILNVTAGAIPVTFEKGADQIIWMKQN
EECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEEEECCCCEEEEEECC
PPVFNRTFDKEMMAGVIGIDTSDMDSNFPIQEVSTGLPAVIVPLNSLNAVKKCKINKDRF
CCCCCCCCCHHHHHHEEECCCCCCCCCCCHHHHHCCCCEEEEECCCCCCHHHCCCCHHHH
EAFMKETEASLLVFTTETYHEQNHINARVFCDCFSVPEDPATGSAIGGLAGYLLHHGYFN
HHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
QHYLSIRAEQGFEINRPSLLHLEAQITENSTEIHVGGNVHLIAKGSWQI
CEEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]