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The map label for this gene is abrB [H]

Identifier: 52783894

GI number: 52783894

Start: 49117

End: 49401

Strand: Reverse

Name: abrB [H]

Synonym: BLi00050

Alternate gene names: 52783894

Gene position: 49401-49117 (Counterclockwise)

Preceding gene: 52784007

Following gene: 52783875

Centisome position: 1.17

GC content: 38.95

Gene sequence:

>285_bases
ATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTACGCTTGG
AATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACATGACTT
GCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGCGCTGAG
CAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Upstream 100 bases:

>100_bases
TTGGAAACCTTGTTATGCTAGGACTGTAAGGATTTTGTCGAATAATGACGAAGATAATAAACACCTATAAAAATAACAAT
CTTTCGGGAGGAGAATGAAT

Downstream 100 bases:

>100_bases
TTATTTTGATTATACAAAAACCGCTCTTGCCGAAGCAAGGGCGGTTTTTTAGTTTTGAATATGGTAAGCGTCATAAATTT
TCCGTTTCGGAACGCCGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEGAE
QIINEIQAQLQSQK

Sequences:

>Translated_94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEGAE
QIINEIQAQLQSQK
>Mature_94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEGAE
QIINEIQAQLQSQK

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10435; Mature: 10435

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
SDDNLKLAGGKLVLSPEGAEQIINEIQAQLQSQK
CCCCEEEECCEEEECCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
SDDNLKLAGGKLVLSPEGAEQIINEIQAQLQSQK
CCCCEEEECCEEEECCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]