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The map label for this gene is arcD [H]

Identifier: 52144475

GI number: 52144475

Start: 850255

End: 851679

Strand: Reverse

Name: arcD [H]

Synonym: BCZK0749

Alternate gene names: 52144475

Gene position: 851679-850255 (Counterclockwise)

Preceding gene: 52144474

Following gene: 52144476

Centisome position: 16.07

GC content: 39.3

Gene sequence:

>1425_bases
ATGCAACAAAAAAAATGGGGCTTTTGGGTACTCACAGCTTTCGTTGTCGGTAACATGGTTGGCGCTGGTATTTTCATGGT
GCCAAGTACGTTGGCACAAACAGCAAGCCCTCTCGGTGTCACTTTAGCTTGGTTAACAACAGGGTTTGGTGTTTTAATGC
TAGCTCTTGTTTTCGGTAATTTAGCAATTCGTCGTCCTGATTTAACGACAGGACCACAAAGTCATGCATATGCTTTATTC
TCAACACCAAAAAAGAAAAAAATGGCTGGTTTCAGTATGGTATGGGGATATTGGGTTGCAAACTGGGCAAGTAACGTTGC
CATCATTACATCATTTGCGGGATATTTATCACTCTTCTTCCCAATTATGAAAGATACACGACTACTATTTTCAATCGGCT
CGTTTAACGTAGAAGTCGGAAAACTAATTACATTTACGATTTGTTCCATCTTACTTTGGGGAACTCACATTATATTAACG
AACGGTGTAAGCGGAGCTGGAAAGCTAAACTTCTTAGCAACAACAACGAAAGTAACTGGATTCCTTTTATTTATCGTCGT
TACGTTATTTGCATTCGAAGCTTCTAAGTTTGGACAATGGTACACACCAATAATCGATAAATCAGGTGTATCACACGGTC
TACTTTCACAAGTAAACTTAGCTGCTCTTACGACGCTTTGGGCATTTATCGGTATTGAATCAGCAGTTCTTTTATCAAAC
CGTGCTGTTTCTCCAAAAACGGTAAAACGTGCAACAGTTGCAGGATTACTTATTACAGTTGCGATTTACTTAGGAATTAC
CATTTTAACAATGGGTGTACTTCACGTTAATACATTACAAGCTTCTGAACGTCCATTAGCAGACGCATTAAATGCTGCAA
TGGGTCATGGCGGCGGGAAACTGATGGCATTACTTGCTCTTACTTCCCTATTCGGTTCCATCTTAGGTTGGATTTTATTA
AGCTCAGAAGTACCGTATCAAGCGGCAAAAGAAGGTTTCTTCCCTTCCTTCTTCACGAAAACGAATAAAAAAGGAAGTCC
AATTTACTCATTACGATTAACAAACATTATGTCGCAAGTGTTCTTATTTTCAACATTATCAGGAACAATCGCGGAAGCTT
ATACATTCGTTATTACTGTATCAACACTGGCCTACCTCATTCCATATCTCGTTTCACCAATCTTCCAGTTAAAACTAGTC
GCTACTGGTGAAACGTACAAAAATGAAATGCGGGCAAGAATTACAGATGGTATAGTCGCAGTAATCGCACTTTGCTACGC
ACTGTGGGTTATTAAAACGGGTGCATCCGATATAAAAACGTTCCTTCTCGGAATTGGTTTATTCGTAATCGGTTTTGCCT
TCTATCCATTAATGAATCGTGATCAGAAAAAAAATAACGAAAAGAAAGACGGGCAAGTTGCATAA

Upstream 100 bases:

>100_bases
CGTGCTTTTTTTGTTTTGTTTGGGACTTCTCTTCCTGACTCAGGAAGACATACATATCTCCTCGCTTGACTTGGTTATAC
TAACTTTGGAGGTATTTTCT

Downstream 100 bases:

>100_bases
CGCAATTTGCTCGTTTTTTCTTTTCTAAAACATATATAATAGAACAAAGAGGTGAAAAACATGTCAATCGAATCACTATG
GAGCAGCCGCTTCCAACAAC

Product: arginine/ornithine antiporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MQQKKWGFWVLTAFVVGNMVGAGIFMVPSTLAQTASPLGVTLAWLTTGFGVLMLALVFGNLAIRRPDLTTGPQSHAYALF
STPKKKKMAGFSMVWGYWVANWASNVAIITSFAGYLSLFFPIMKDTRLLFSIGSFNVEVGKLITFTICSILLWGTHIILT
NGVSGAGKLNFLATTTKVTGFLLFIVVTLFAFEASKFGQWYTPIIDKSGVSHGLLSQVNLAALTTLWAFIGIESAVLLSN
RAVSPKTVKRATVAGLLITVAIYLGITILTMGVLHVNTLQASERPLADALNAAMGHGGGKLMALLALTSLFGSILGWILL
SSEVPYQAAKEGFFPSFFTKTNKKGSPIYSLRLTNIMSQVFLFSTLSGTIAEAYTFVITVSTLAYLIPYLVSPIFQLKLV
ATGETYKNEMRARITDGIVAVIALCYALWVIKTGASDIKTFLLGIGLFVIGFAFYPLMNRDQKKNNEKKDGQVA

Sequences:

>Translated_474_residues
MQQKKWGFWVLTAFVVGNMVGAGIFMVPSTLAQTASPLGVTLAWLTTGFGVLMLALVFGNLAIRRPDLTTGPQSHAYALF
STPKKKKMAGFSMVWGYWVANWASNVAIITSFAGYLSLFFPIMKDTRLLFSIGSFNVEVGKLITFTICSILLWGTHIILT
NGVSGAGKLNFLATTTKVTGFLLFIVVTLFAFEASKFGQWYTPIIDKSGVSHGLLSQVNLAALTTLWAFIGIESAVLLSN
RAVSPKTVKRATVAGLLITVAIYLGITILTMGVLHVNTLQASERPLADALNAAMGHGGGKLMALLALTSLFGSILGWILL
SSEVPYQAAKEGFFPSFFTKTNKKGSPIYSLRLTNIMSQVFLFSTLSGTIAEAYTFVITVSTLAYLIPYLVSPIFQLKLV
ATGETYKNEMRARITDGIVAVIALCYALWVIKTGASDIKTFLLGIGLFVIGFAFYPLMNRDQKKNNEKKDGQVA
>Mature_474_residues
MQQKKWGFWVLTAFVVGNMVGAGIFMVPSTLAQTASPLGVTLAWLTTGFGVLMLALVFGNLAIRRPDLTTGPQSHAYALF
STPKKKKMAGFSMVWGYWVANWASNVAIITSFAGYLSLFFPIMKDTRLLFSIGSFNVEVGKLITFTICSILLWGTHIILT
NGVSGAGKLNFLATTTKVTGFLLFIVVTLFAFEASKFGQWYTPIIDKSGVSHGLLSQVNLAALTTLWAFIGIESAVLLSN
RAVSPKTVKRATVAGLLITVAIYLGITILTMGVLHVNTLQASERPLADALNAAMGHGGGKLMALLALTSLFGSILGWILL
SSEVPYQAAKEGFFPSFFTKTNKKGSPIYSLRLTNIMSQVFLFSTLSGTIAEAYTFVITVSTLAYLIPYLVSPIFQLKLV
ATGETYKNEMRARITDGIVAVIALCYALWVIKTGASDIKTFLLGIGLFVIGFAFYPLMNRDQKKNNEKKDGQVA

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=468, Percent_Identity=31.1965811965812, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI2367353, Length=477, Percent_Identity=29.1404612159329, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1790575, Length=403, Percent_Identity=24.0694789081886, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786908, Length=398, Percent_Identity=24.1206030150754, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87082250, Length=370, Percent_Identity=25.6756756756757, Blast_Score=85, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51342; Mature: 51342

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQKKWGFWVLTAFVVGNMVGAGIFMVPSTLAQTASPLGVTLAWLTTGFGVLMLALVFGN
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
LAIRRPDLTTGPQSHAYALFSTPKKKKMAGFSMVWGYWVANWASNVAIITSFAGYLSLFF
CEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
PIMKDTRLLFSIGSFNVEVGKLITFTICSILLWGTHIILTNGVSGAGKLNFLATTTKVTG
HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEHHHHHH
FLLFIVVTLFAFEASKFGQWYTPIIDKSGVSHGLLSQVNLAALTTLWAFIGIESAVLLSN
HHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
RAVSPKTVKRATVAGLLITVAIYLGITILTMGVLHVNTLQASERPLADALNAAMGHGGGK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHH
LMALLALTSLFGSILGWILLSSEVPYQAAKEGFFPSFFTKTNKKGSPIYSLRLTNIMSQV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHCCCCCCCCEEEHHHHHHHHHH
FLFSTLSGTIAEAYTFVITVSTLAYLIPYLVSPIFQLKLVATGETYKNEMRARITDGIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHH
VIALCYALWVIKTGASDIKTFLLGIGLFVIGFAFYPLMNRDQKKNNEKKDGQVA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC
>Mature Secondary Structure
MQQKKWGFWVLTAFVVGNMVGAGIFMVPSTLAQTASPLGVTLAWLTTGFGVLMLALVFGN
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
LAIRRPDLTTGPQSHAYALFSTPKKKKMAGFSMVWGYWVANWASNVAIITSFAGYLSLFF
CEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
PIMKDTRLLFSIGSFNVEVGKLITFTICSILLWGTHIILTNGVSGAGKLNFLATTTKVTG
HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEHHHHHH
FLLFIVVTLFAFEASKFGQWYTPIIDKSGVSHGLLSQVNLAALTTLWAFIGIESAVLLSN
HHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
RAVSPKTVKRATVAGLLITVAIYLGITILTMGVLHVNTLQASERPLADALNAAMGHGGGK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHH
LMALLALTSLFGSILGWILLSSEVPYQAAKEGFFPSFFTKTNKKGSPIYSLRLTNIMSQV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHCCCCCCCCEEEHHHHHHHHHH
FLFSTLSGTIAEAYTFVITVSTLAYLIPYLVSPIFQLKLVATGETYKNEMRARITDGIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHH
VIALCYALWVIKTGASDIKTFLLGIGLFVIGFAFYPLMNRDQKKNNEKKDGQVA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]