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The map label for this gene is ydeE [H]

Identifier: 52144215

GI number: 52144215

Start: 1122457

End: 1123359

Strand: Direct

Name: ydeE [H]

Synonym: BCZK1014

Alternate gene names: 52144215

Gene position: 1122457-1123359 (Clockwise)

Preceding gene: 52144216

Following gene: 52144212

Centisome position: 21.17

GC content: 37.98

Gene sequence:

>903_bases
ATGGAAAGCTATGAAACACAAATTCAAAGATCCATTGATTATATTGAGGAAGATGTAATGGAAAAACAAACGCTGCGTAA
TTTAGCTCGCATTGCAGGTTTTTCTGAGTCGCATTTTCATCGTGTATTCCAGGCGTTAGTAGGTGATACAGTAATGGAGT
ATGTTCGGAAGAGGAGGTTAGCCCGGGCAGCTTATCAACTTTCTCATACGGATGAAAAAATTATTGATATTGCATTTGAA
CATGGCTTTCAATCTCACGAAACGTTCACGAGAGCCTTTAAAAAATTATTTCAAATGACACCGAGTGAATATCGAAAGCA
AGAAATAGAAACCCCGATGTATTACAGCGTGAATGTAAAGCAAAGAAAATTAAATCCGTATTTAGGAGGCATACAAATGG
AATATCGTATTGTAAATAAACCAGAATTTTTAATGGCGGGTTATGAACTGAAGACGACAAGTAAAGAAGGGAAGAACCAT
CAAGACATTCCAGCATTTTGGCAAGAATATTTACAAAAAGATCTTGGAACGACGATTCCGAATCGTAAAGATACGAGCCA
ATGGGTAGAGCTTGGATTATGTACTGATTTTAATTTAGAAACAGGGGACTTCACTTATATTATCGGAATGGAAGTTACAG
ACTTTGAAAATGTACCAAATGAAATTGCAAAGCGTACGTTCCCAGCAGCAACATACGCAGTATTTACAACGCCGAAAGTT
CCTCATGAAGAAATGGTATCGTCTATTCACCAAACATGGAATGCAGTATTCTCAGAGTGGTTCCCGCATTCAGGATACGA
ACATTGCGGCGTTACAGAATTTGAATTATACGATGAGCGTTGTCACGAAGATAAAAGTGAGTTCGCTCAAGTAGAGCTTT
GGATACCGGTGAAGAAGAAATAA

Upstream 100 bases:

>100_bases
TATAAAAAAGTTACATTTGTTTTTGGAATTATAGTAAAAAACGTCAAGAATTGGATAAGATTCTCTTTTATCATAATACA
TATAAGGCGGGTGAACAGAG

Downstream 100 bases:

>100_bases
TAGATTGAGAGCGAGTCATTGAGAAATGGTTCGCTTTTTTATAAATGGGGAGTGGGAATATGTTCCAAAAAATAGAATGT
GTATCTATACATACGAAGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK

Sequences:

>Translated_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK
>Mature_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=99, Percent_Identity=39.3939393939394, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=35.9223300970874, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=31.6326530612245, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35354; Mature: 35354

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVK
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHEEEEEEEECCCC
>Mature Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVK
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQVELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]