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The map label for this gene is yrdC [H]

Identifier: 52143976

GI number: 52143976

Start: 1350135

End: 1350692

Strand: Direct

Name: yrdC [H]

Synonym: BCZK1254

Alternate gene names: 52143976

Gene position: 1350135-1350692 (Clockwise)

Preceding gene: 52143975

Following gene: 52143974

Centisome position: 25.47

GC content: 34.41

Gene sequence:

>558_bases
ATGATGAATAATCAAATAGCACTTATTATAATTGATGTACAAAAGGCGTTTCAATTACCATACTGGGGTGAGAGAAATAA
TCTTTTTGCTGAAGAAAATATGAGAATTTTGTTAGCAGAATGGAGAAAAAGGAAACGACCAGTTTTTCATATTCAACATG
TAAATAAAGAAAATGATCAGTCGATGTTTTATGAGGGAGCGGAAACTGTAAACTTTAAAGAAGAAGTGCAACCACTACCA
GGTGAAGTGGTTATTCAAAAATCTGTTAACAGCGCCTTCATTGGGACAAATTTAAAAGAACAATTAAGAAAGAACAAATG
CAATGCAGTAGTGATTGTAGGATTAACGACAAATCACTGTGTGGAGACTACGACACGAATGGCAGGTAATTTAGGATTTA
CAACGTATGTAGTGCGTGATGCGACGGCTACTTTTAACCGTAAAGGTCTAGATGGTAAAGAGTATAGCGCAGAAGATATT
CACAATATGACACTTGTAAATTTACATGAAGAGTTTGCTACGATTGTGACGACAAAAGAAGCGTTAAAATTATTTTAA

Upstream 100 bases:

>100_bases
ACGGAAAAAGAAATTGTAGAGCTTTGCGCTTATATTTGTTTTATTACTGCGTCACAACAACTTGGTTTTCTATTTCAATT
ACAGCCGAAAGAAGGAGAAA

Downstream 100 bases:

>100_bases
GAAAATAATTGCGAATTATGTAGAAAAAAATAAGAATATTTCGTATAATCTAAGTACAATCATTTTGAAAATAGGGGTGG
CATCATATGGAGCAAATTCC

Product: isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MMNNQIALIIIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQSMFYEGAETVNFKEEVQPLP
GEVVIQKSVNSAFIGTNLKEQLRKNKCNAVVIVGLTTNHCVETTTRMAGNLGFTTYVVRDATATFNRKGLDGKEYSAEDI
HNMTLVNLHEEFATIVTTKEALKLF

Sequences:

>Translated_185_residues
MMNNQIALIIIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQSMFYEGAETVNFKEEVQPLP
GEVVIQKSVNSAFIGTNLKEQLRKNKCNAVVIVGLTTNHCVETTTRMAGNLGFTTYVVRDATATFNRKGLDGKEYSAEDI
HNMTLVNLHEEFATIVTTKEALKLF
>Mature_185_residues
MMNNQIALIIIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQSMFYEGAETVNFKEEVQPLP
GEVVIQKSVNSAFIGTNLKEQLRKNKCNAVVIVGLTTNHCVETTTRMAGNLGFTTYVVRDATATFNRKGLDGKEYSAEDI
HNMTLVNLHEEFATIVTTKEALKLF

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 21221; Mature: 21221

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNNQIALIIIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQ
CCCCEEEEEEEEEHHHHCCCCCCCCCCEECCCCCEEEEEHHHHHCCCEEEEEECCCCCCC
SMFYEGAETVNFKEEVQPLPGEVVIQKSVNSAFIGTNLKEQLRKNKCNAVVIVGLTTNHC
CEEECCCCCCCCHHHCCCCCCEEEEEECCCCEEECCCHHHHHHHCCCCEEEEEEECCCCH
VETTTRMAGNLGFTTYVVRDATATFNRKGLDGKEYSAEDIHNMTLVNLHEEFATIVTTKE
HHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHCCEEEEEHHHHHHHHHCCHH
ALKLF
HHHCC
>Mature Secondary Structure
MMNNQIALIIIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQ
CCCCEEEEEEEEEHHHHCCCCCCCCCCEECCCCCEEEEEHHHHHCCCEEEEEECCCCCCC
SMFYEGAETVNFKEEVQPLPGEVVIQKSVNSAFIGTNLKEQLRKNKCNAVVIVGLTTNHC
CEEECCCCCCCCHHHCCCCCCEEEEEECCCCEEECCCHHHHHHHCCCCEEEEEEECCCCH
VETTTRMAGNLGFTTYVVRDATATFNRKGLDGKEYSAEDIHNMTLVNLHEEFATIVTTKE
HHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHCCEEEEEHHHHHHHHHCCHH
ALKLF
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 9287000 [H]