Click here to switch to the map view.

The map label for this gene is 52143891

Identifier: 52143891

GI number: 52143891

Start: 1430274

End: 1431584

Strand: Reverse

Name: 52143891

Synonym: BCZK1338

Alternate gene names: NA

Gene position: 1431584-1430274 (Counterclockwise)

Preceding gene: 52143890

Following gene: 52143892

Centisome position: 27.01

GC content: 44.47

Gene sequence:

>1311_bases
ATGAACAATAAAAATAAAGGAAAAGTATTTTATGGTAATGATTGTTGCGAAGTAAGAGCTTGTAGTCATATTAACATCTC
TAAGTCCGAACTTACAGAATTCGTTAGACTTCTTCAAGCTCTTGGCCAAGCTATTCAAGCTGTCTTTCAGAACCCTTCTC
AAACTAATATCGATAACTTGATAGCTGCGCTCAATAACTTACAAAAGTTCCTCAATTGCTTAGATTTATCTCCAGCACAA
AAACAAATTGGAAATTCTATTATTGCTAATTTATTAACTATTTTAAGAACAACACCTTTCTCATGCGGAGCATTATACGT
TGAGCTACAAAGCTTGCTTAATTATTTATTATATATCGCTAAGTTATTCAAAGTAGATTGTTGTACGATTGACAAACTAG
TTAGACTCATAACAGAGATCCAAACTATTCTAGTTCAATACGGATCAGGTTGCCTTGGAGGCGGAGGCGCAACAGGTGCT
ACTGGTGCTACTGGCGCTACTGGCGCTACTGGCGCTACTGGGCCTCAAGGACCGGCTGGTGCTACTGGTGCTACTGGGCC
TCAAGGACCAGCGGGTGCGCAAGGTGCTACTGGACCTCAAGGACCTCAAGGTGCTCAAGGACCAGCAGGTGTTCAAGGTG
CTACTGGACCTCAAGGACCTCAAGGTATTCAAGGACCAGCAGGTGCTACGGGGGCTACTGGTGCTACCGGCGCTCAAGGA
CCAGCCGGTGCTACTGGCGCTACGGGTGCTCAAGGACCTCAAGGCGTTCAAGGACCAGCGGGGGCTACCGGCGCTACGGG
TGCTCAAGGACCAGCAGGTGCTACTGGCGCTACGGGTGCTCAAGGACCTCAAGGCGTTCAAGGACCAGCAGGTGCTACTG
GCGCTACGGGTGCTACAGGACCAGCAGGTACGCCAATTCCTGTAACGATCGCGGCAATCGGAAACTCCAATCCACAAACT
ATATCCCCTGGAACAAACATCCAATTTAATCAAGTTTTCGAAATAAATAACATTAATTTCAATGATGCTGCAGATACTTT
AACAATTTTAGAAACAGGCGTATATGATATTAGTTTCTCAGCGTCTACAACTTTCCCAGGATCTTCACCATTTGGATTCG
GTATTTCATTCAATGGTCAACCACCTACTCGTAATTTCTCAACTAACGTTATCGGTAGTGCTGTATCGTTCTCTACAATC
GTTACTTTACAAGCTGGTACAACGATTTCTATACAACCTACAGCAAACACTATTTCTATTCCTAACACAGGCGATACAAC
AGCAACACTATCTGTATTCCGAATTTACTAA

Upstream 100 bases:

>100_bases
TTTTTTTAGAAATGGTAGTTTGTCCATTACGAATTCAGTATAAATTTCATTTTAATATATAGTAATGACTATTGATTCTA
TGAAAGAAAGGAATGAAAAG

Downstream 100 bases:

>100_bases
TTTTCGCTTAAAAAGTATATTTATAATAATATGTATCGTTTAACTGTGCATTAAATCTCTCTTTATATAGAAAGGAGCAC
TTATTTGGGAGGATAAGTGC

Product: group-specific protein

Products: NA

Alternate protein names: Collagen Triple Helix Repeat Protein; Group-Specific Protein; Collagen Triple Helix Repeat Domain-Containing Protein; Collagen-Like Protein

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MNNKNKGKVFYGNDCCEVRACSHINISKSELTEFVRLLQALGQAIQAVFQNPSQTNIDNLIAALNNLQKFLNCLDLSPAQ
KQIGNSIIANLLTILRTTPFSCGALYVELQSLLNYLLYIAKLFKVDCCTIDKLVRLITEIQTILVQYGSGCLGGGGATGA
TGATGATGATGATGPQGPAGATGATGPQGPAGAQGATGPQGPQGAQGPAGVQGATGPQGPQGIQGPAGATGATGATGAQG
PAGATGATGAQGPQGVQGPAGATGATGAQGPAGATGATGAQGPQGVQGPAGATGATGATGPAGTPIPVTIAAIGNSNPQT
ISPGTNIQFNQVFEINNINFNDAADTLTILETGVYDISFSASTTFPGSSPFGFGISFNGQPPTRNFSTNVIGSAVSFSTI
VTLQAGTTISIQPTANTISIPNTGDTTATLSVFRIY

Sequences:

>Translated_436_residues
MNNKNKGKVFYGNDCCEVRACSHINISKSELTEFVRLLQALGQAIQAVFQNPSQTNIDNLIAALNNLQKFLNCLDLSPAQ
KQIGNSIIANLLTILRTTPFSCGALYVELQSLLNYLLYIAKLFKVDCCTIDKLVRLITEIQTILVQYGSGCLGGGGATGA
TGATGATGATGATGPQGPAGATGATGPQGPAGAQGATGPQGPQGAQGPAGVQGATGPQGPQGIQGPAGATGATGATGAQG
PAGATGATGAQGPQGVQGPAGATGATGAQGPAGATGATGAQGPQGVQGPAGATGATGATGPAGTPIPVTIAAIGNSNPQT
ISPGTNIQFNQVFEINNINFNDAADTLTILETGVYDISFSASTTFPGSSPFGFGISFNGQPPTRNFSTNVIGSAVSFSTI
VTLQAGTTISIQPTANTISIPNTGDTTATLSVFRIY
>Mature_436_residues
MNNKNKGKVFYGNDCCEVRACSHINISKSELTEFVRLLQALGQAIQAVFQNPSQTNIDNLIAALNNLQKFLNCLDLSPAQ
KQIGNSIIANLLTILRTTPFSCGALYVELQSLLNYLLYIAKLFKVDCCTIDKLVRLITEIQTILVQYGSGCLGGGGATGA
TGATGATGATGATGPQGPAGATGATGPQGPAGAQGATGPQGPQGAQGPAGVQGATGPQGPQGIQGPAGATGATGATGAQG
PAGATGATGAQGPQGVQGPAGATGATGAQGPAGATGATGAQGPQGVQGPAGATGATGATGPAGTPIPVTIAAIGNSNPQT
ISPGTNIQFNQVFEINNINFNDAADTLTILETGVYDISFSASTTFPGSSPFGFGISFNGQPPTRNFSTNVIGSAVSFSTI
VTLQAGTTISIQPTANTISIPNTGDTTATLSVFRIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI183583553, Length=166, Percent_Identity=39.7590361445783, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI115392133, Length=162, Percent_Identity=44.4444444444444, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI65301115, Length=220, Percent_Identity=33.6363636363636, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI56847616, Length=209, Percent_Identity=33.4928229665072, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI156616290, Length=196, Percent_Identity=32.1428571428571, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI5803080, Length=172, Percent_Identity=41.8604651162791, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI111118976, Length=186, Percent_Identity=43.5483870967742, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI98985806, Length=141, Percent_Identity=41.8439716312057, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI98985810, Length=141, Percent_Identity=41.8439716312057, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI299523257, Length=141, Percent_Identity=41.8439716312057, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI115527062, Length=195, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI299523253, Length=141, Percent_Identity=41.8439716312057, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI111118974, Length=186, Percent_Identity=43.5483870967742, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI115527066, Length=195, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI115527070, Length=195, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI48762934, Length=132, Percent_Identity=46.2121212121212, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI18780273, Length=152, Percent_Identity=41.4473684210526, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI4502951, Length=134, Percent_Identity=47.7611940298507, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI89363017, Length=152, Percent_Identity=43.421052631579, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI122937273, Length=333, Percent_Identity=26.4264264264264, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI110735435, Length=151, Percent_Identity=43.046357615894, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI73486666, Length=182, Percent_Identity=38.4615384615385, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI119829187, Length=189, Percent_Identity=37.037037037037, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI154759255, Length=178, Percent_Identity=36.5168539325843, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI32140760, Length=165, Percent_Identity=38.7878787878788, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI56243590, Length=120, Percent_Identity=40.8333333333333, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI111118970, Length=118, Percent_Identity=46.6101694915254, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI111118968, Length=118, Percent_Identity=46.6101694915254, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI11386161, Length=152, Percent_Identity=44.078947368421, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI111118972, Length=118, Percent_Identity=46.6101694915254, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI61699226, Length=166, Percent_Identity=45.7831325301205, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI87196339, Length=198, Percent_Identity=31.8181818181818, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71992048, Length=142, Percent_Identity=45.0704225352113, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17507107, Length=123, Percent_Identity=47.9674796747967, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17569903, Length=133, Percent_Identity=45.8646616541353, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508163, Length=110, Percent_Identity=52.7272727272727, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115533544, Length=118, Percent_Identity=45.7627118644068, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17535735, Length=132, Percent_Identity=43.1818181818182, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17552372, Length=127, Percent_Identity=41.7322834645669, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71989452, Length=134, Percent_Identity=44.0298507462687, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45549584, Length=127, Percent_Identity=40.1574803149606, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221379525, Length=123, Percent_Identity=39.0243902439024, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI221379533, Length=151, Percent_Identity=35.7615894039735, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43060; Mature: 43060

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKNKGKVFYGNDCCEVRACSHINISKSELTEFVRLLQALGQAIQAVFQNPSQTNIDNL
CCCCCCCCEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
IAALNNLQKFLNCLDLSPAQKQIGNSIIANLLTILRTTPFSCGALYVELQSLLNYLLYIA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KLFKVDCCTIDKLVRLITEIQTILVQYGSGCLGGGGATGATGATGATGATGATGPQGPAG
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ATGATGPQGPAGAQGATGPQGPQGAQGPAGVQGATGPQGPQGIQGPAGATGATGATGAQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAGATGATGAQGPQGVQGPAGATGATGAQGPAGATGATGAQGPQGVQGPAGATGATGATG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAGTPIPVTIAAIGNSNPQTISPGTNIQFNQVFEINNINFNDAADTLTILETGVYDISFS
CCCCCCEEEEEEECCCCCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEC
ASTTFPGSSPFGFGISFNGQPPTRNFSTNVIGSAVSFSTIVTLQAGTTISIQPTANTISI
CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHEEEEEEEEECCCEEEEECCCCEEEC
PNTGDTTATLSVFRIY
CCCCCCCEEEEEEEEC
>Mature Secondary Structure
MNNKNKGKVFYGNDCCEVRACSHINISKSELTEFVRLLQALGQAIQAVFQNPSQTNIDNL
CCCCCCCCEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
IAALNNLQKFLNCLDLSPAQKQIGNSIIANLLTILRTTPFSCGALYVELQSLLNYLLYIA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KLFKVDCCTIDKLVRLITEIQTILVQYGSGCLGGGGATGATGATGATGATGATGPQGPAG
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ATGATGPQGPAGAQGATGPQGPQGAQGPAGVQGATGPQGPQGIQGPAGATGATGATGAQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAGATGATGAQGPQGVQGPAGATGATGAQGPAGATGATGAQGPQGVQGPAGATGATGATG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAGTPIPVTIAAIGNSNPQTISPGTNIQFNQVFEINNINFNDAADTLTILETGVYDISFS
CCCCCCEEEEEEECCCCCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEC
ASTTFPGSSPFGFGISFNGQPPTRNFSTNVIGSAVSFSTIVTLQAGTTISIQPTANTISI
CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHEEEEEEEEECCCEEEEECCCCEEEC
PNTGDTTATLSVFRIY
CCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA