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The map label for this gene is gntR [H]

Identifier: 52143596

GI number: 52143596

Start: 1726034

End: 1726753

Strand: Direct

Name: gntR [H]

Synonym: BCZK1638

Alternate gene names: 52143596

Gene position: 1726034-1726753 (Clockwise)

Preceding gene: 52143597

Following gene: 52143595

Centisome position: 32.56

GC content: 32.64

Gene sequence:

>720_bases
ATGATTGCAAAAGATAATCGAACACCATTATACTACCAACTAATGGATATTATTGTGGAGCAAATTGAAACTGGGAATTT
ACAAGAACATGATAAGCTTCCATCAGAACGTGAACTATGCGAGATTCATGATGTAAGTAGAACAACAGTAAGGCAGACGA
TGCAAGAATTAGAAAAAGAAGGATATATTTATAAAAAACATGGTAAAGGGAGTTTTGTCTCACCTCGTGTATTTAATCAA
AGTCTTGTCCGTTTTTATAGTTTCACAGAAGAAATGAAAAAATTTGGAAAGGTTCCATCATCAACAGTCGTATCATTTTC
CATAATTCATTGCGATAAAAAAATATCGAAAATTATGAATCTTAATAATGGAGAAGAGGTGTATCAAATTACGAGATTAA
GGTTAGCTGATAAAGAACCCATGCTATTTGAAACATCTTATATTCCTGTAAAGTTCTTTCCATATTTAACGAAGAAAGAA
TTAGAAGAAACACCAATGTACGAGATTTTCCGTACAAAATACCAAGTTCATATCACACGTGCGGTGGAAAGTTTCAAAGC
GATTGCAGCAGAAAAAGAGCATGCAACATGGCTACAAGTTGAAAAGAATGAACCATCTTTATCTCTAGAACGTATTGCAT
ATGCGAAAGAAAATATAATTGAATACACACAGACCATTGCAAGAGGAGATAAATTTACTTACACAGTTGAATTACAATAA

Upstream 100 bases:

>100_bases
GCTTATCTTTCTCTGTGAGAAAGTAATGGTAATTCCTATTTTCATTCGATATAATAGCCATAAACTGGTCATAACAACTT
TATAGATGAGGGAGTAAAAC

Downstream 100 bases:

>100_bases
GTATAGTTATACTTATTGTAATTCAACTGGTAATGATGACGTGATAAGATGTGGACTAATATTAAGGGGGTTCTGAAATG
TTATTACATGCAAATGATGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MIAKDNRTPLYYQLMDIIVEQIETGNLQEHDKLPSERELCEIHDVSRTTVRQTMQELEKEGYIYKKHGKGSFVSPRVFNQ
SLVRFYSFTEEMKKFGKVPSSTVVSFSIIHCDKKISKIMNLNNGEEVYQITRLRLADKEPMLFETSYIPVKFFPYLTKKE
LEETPMYEIFRTKYQVHITRAVESFKAIAAEKEHATWLQVEKNEPSLSLERIAYAKENIIEYTQTIARGDKFTYTVELQ

Sequences:

>Translated_239_residues
MIAKDNRTPLYYQLMDIIVEQIETGNLQEHDKLPSERELCEIHDVSRTTVRQTMQELEKEGYIYKKHGKGSFVSPRVFNQ
SLVRFYSFTEEMKKFGKVPSSTVVSFSIIHCDKKISKIMNLNNGEEVYQITRLRLADKEPMLFETSYIPVKFFPYLTKKE
LEETPMYEIFRTKYQVHITRAVESFKAIAAEKEHATWLQVEKNEPSLSLERIAYAKENIIEYTQTIARGDKFTYTVELQ
>Mature_239_residues
MIAKDNRTPLYYQLMDIIVEQIETGNLQEHDKLPSERELCEIHDVSRTTVRQTMQELEKEGYIYKKHGKGSFVSPRVFNQ
SLVRFYSFTEEMKKFGKVPSSTVVSFSIIHCDKKISKIMNLNNGEEVYQITRLRLADKEPMLFETSYIPVKFFPYLTKKE
LEETPMYEIFRTKYQVHITRAVESFKAIAAEKEHATWLQVEKNEPSLSLERIAYAKENIIEYTQTIARGDKFTYTVELQ

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=233, Percent_Identity=24.8927038626609, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788418, Length=238, Percent_Identity=26.0504201680672, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786950, Length=229, Percent_Identity=27.0742358078603, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1790118, Length=198, Percent_Identity=24.7474747474747, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790540, Length=232, Percent_Identity=20.2586206896552, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28148; Mature: 28148

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKDNRTPLYYQLMDIIVEQIETGNLQEHDKLPSERELCEIHDVSRTTVRQTMQELEKE
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GYIYKKHGKGSFVSPRVFNQSLVRFYSFTEEMKKFGKVPSSTVVSFSIIHCDKKISKIMN
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEHHHHHHHHHHC
LNNGEEVYQITRLRLADKEPMLFETSYIPVKFFPYLTKKELEETPMYEIFRTKYQVHITR
CCCCHHHHHHHHHHHCCCCCCEEECCCCCEEECCCHHHHHHHHCHHHHHHHHHHHHHHHH
AVESFKAIAAEKEHATWLQVEKNEPSLSLERIAYAKENIIEYTQTIARGDKFTYTVELQ
HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
>Mature Secondary Structure
MIAKDNRTPLYYQLMDIIVEQIETGNLQEHDKLPSERELCEIHDVSRTTVRQTMQELEKE
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GYIYKKHGKGSFVSPRVFNQSLVRFYSFTEEMKKFGKVPSSTVVSFSIIHCDKKISKIMN
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEHHHHHHHHHHC
LNNGEEVYQITRLRLADKEPMLFETSYIPVKFFPYLTKKELEETPMYEIFRTKYQVHITR
CCCCHHHHHHHHHHHCCCCCCEEECCCCCEEECCCHHHHHHHHCHHHHHHHHHHHHHHHH
AVESFKAIAAEKEHATWLQVEKNEPSLSLERIAYAKENIIEYTQTIARGDKFTYTVELQ
HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]