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The map label for this gene is deoR [H]

Identifier: 52143532

GI number: 52143532

Start: 1801247

End: 1802194

Strand: Direct

Name: deoR [H]

Synonym: BCZK1702

Alternate gene names: 52143532

Gene position: 1801247-1802194 (Clockwise)

Preceding gene: 52143533

Following gene: 52143530

Centisome position: 33.98

GC content: 34.81

Gene sequence:

>948_bases
ATGGATAAAGATAAACAACAATTAAGCGTTGAAGTTGCAAGATTATATTATCAATCAGATTATAGTCAGCAAGAAATTGC
TAACAAATTAAATATTTCAAGACCGACAATTTCTAGACTATTAAAGTACGCGAAAGAAAAAGGATTTGTTCAAATTAGTA
TAGCCGATCCATTCGCTGATTTAGATAATGTCGGCAATTTACTGAAAGAAAAATATAACTTGTTAGAAGCACATGTTGTA
TTTTCCCCAGTGCCAGAATATGCAACGATTACAGAGTATATAAGTAAATATGCAGCTGAGTATATGGAAAAGACGGTTAA
AAACGGTGATATCGTTGGTGTAAGCTGGGGAATGACGATGTATGAAATCGCTAGAAAAATCGTACCACAACATGTAAAAG
GTGTAGAAGTTGTCCAGCTAAAAGGTGGTATTAGCCATTCGAGTGTAAATACATATGCAAATGAAACCATTGCATTATTT
GCAGATGCTTTTCAAGCGACGCCAAGAAATCTACCTCTTCCAGTTATATTTGATAATGCAGTGACAAAAGAATTAGTAGA
GCAGGATCGACATATTCATCACATTATCGAAATGGGGAAACAAGCGAATATTGCAATTTTCACTGTAGGAACAGTGCGAG
ACGAAGCGCTATTATTCCGATTAGGTTATTTCGATAAGGATGAAACGAGTTTACTCAAAAAACAATCGGTCGGTGACATT
TGTTCACGTTTCTTTGATGGAGACGGAAATATTAGTAGTGAAGAAATTAATAAGCGAACCATCGGAATTGAGTTAGAAGA
ACTAAAATTAAAGAAACGCTCTATTTTAGTTGCAGGTGGTAATAGAAAAATAAAAGCAATTGATGGTGCGTTACGTGGCG
GGTATGCAAATGTATTAATTATCGATCAGCATACGGCGAAAGAATTGTTACATTATAAAAAAGGTTAG

Upstream 100 bases:

>100_bases
GTTCAGGTATATAAAATTCAGTAGTCGAAATTTCTTGCATAAAGCTGTATAATGCTTGTAACGAAAGGGAAATACAGGAA
AGGATTTGTATTGAGTTACT

Downstream 100 bases:

>100_bases
AAATAAAAGGCTTTCTCAAGATATTCATTTTGAGAAAGCCTTTTATTTTGTTATGTATGAATTGATAGGAGTGTTTTTTG
AATACAAATTGCAGTTTTTA

Product: deoxyribonucleoside regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFADLDNVGNLLKEKYNLLEAHVV
FSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTMYEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALF
ADAFQATPRNLPLPVIFDNAVTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
CSRFFDGDGNISSEEINKRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLIIDQHTAKELLHYKKG

Sequences:

>Translated_315_residues
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFADLDNVGNLLKEKYNLLEAHVV
FSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTMYEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALF
ADAFQATPRNLPLPVIFDNAVTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
CSRFFDGDGNISSEEINKRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLIIDQHTAKELLHYKKG
>Mature_315_residues
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFADLDNVGNLLKEKYNLLEAHVV
FSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTMYEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALF
ADAFQATPRNLPLPVIFDNAVTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
CSRFFDGDGNISSEEINKRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLIIDQHTAKELLHYKKG

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=326, Percent_Identity=29.7546012269939, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1787791, Length=309, Percent_Identity=27.1844660194175, Blast_Score=107, Evalue=7e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35382; Mature: 35382

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFAD
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCCHH
LDNVGNLLKEKYNLLEAHVVFSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTM
HHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
YEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALFADAFQATPRNLPLPVIFDNA
HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCHHHEEHHHHHCCCCCCCCCEEECHH
VTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHEEECCCCCCHHHHHHHHHHHHH
CSRFFDGDGNISSEEINKRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLI
HHHHCCCCCCCCHHHHCHHEECEEHHHHHHCEEEEEEECCCCEEEEECHHHCCCCEEEEE
IDQHTAKELLHYKKG
EECHHHHHHHHHCCC
>Mature Secondary Structure
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFAD
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCCHH
LDNVGNLLKEKYNLLEAHVVFSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTM
HHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
YEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALFADAFQATPRNLPLPVIFDNA
HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCHHHEEHHHHHCCCCCCCCCEEECHH
VTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHEEECCCCCCHHHHHHHHHHHHH
CSRFFDGDGNISSEEINKRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLI
HHHHCCCCCCCCHHHHCHHEECEEHHHHHHCEEEEEEECCCCEEEEECHHHCCCCEEEEE
IDQHTAKELLHYKKG
EECHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]