BacMap

Definition	Bacillus cereus E33L, complete genome.
Accession	NC_006274
Length	5,300,915

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The map label for this gene is yocR [H]

Identifier: 52143238

GI number: 52143238

Start: 2121722

End: 2123062

Strand: Direct

Name: yocR [H]

Synonym: BCZK1999

Alternate gene names: 52143238

Gene position: 2121722-2123062 (Clockwise)

Preceding gene: 52143241

Following gene: 52143237

Centisome position: 40.03

GC content: 35.72

Gene sequence:

>1341_bases
ATGAAACAAACGGAGCAATGGACTTCGAAATTAGGTTTTATAATGGCTGCAGCAGGATCAGCAATTGGACTAGGTGCAAT
ATGGAAGTTTCCTTATATCGCCGGGAAGAGCGGGGGAGGGGCATTCTTTTTAATCTTTATATTATTTACTTTATTAATTG
GATTACCACTACTTATAGCTGAATTTATGATTGGACGTAGTACGCAGAAACAAGCAGTTGGCGCATTTAAAAGTATTGCA
CCAAATACAGGGTGGCACTGGATTGGACGCCTTGGTGTAGGAACGTGTTTTATATTACTTTCGTTTTATAGTGTTGTAGG
TGGATGGGTATTCATTTATTTATTCAGAGGAGTAACTGGACAACTTATTACTCCAGGACAAAATTACGGTGCGTTGTTTA
CTGAAACAATTGGAAATCCCGCTTGGGCTATTTTGGGACATTTCGCTTTTATGTTCATTACGGTTTGGGTTGTATCAAAA
GGTGTACAAAACGGAATTGAAAAAGCAAGTAAATATATGTTACCAGCGTTGTTCGTTTTATTTGTGGCTCTTATTGTTCG
TTCATTAACACTTGATAATGCGATGCAGGGTGTGAAGTTTTTCTTGCAACCAGATTTTTCAAAGATTACTTCAGAAAGTA
TTTTGTTCGCAATGGGCCAATCATTCTTTGCGATTAGTATCGGGATTTCTATTATGGTTACGTATAGTTCCTATTTAAAT
AAAAAAGAAAGTTTACCAAAATCAGCAATAACAATTGTTGGATTGAATTTATTTGTTTCATTATTTGCAGGTCTTGCTAT
TTTTCCGGCCGTATTTTCATTAGGAATGGAGCCGACAGAAGGGCCTGGCTTACTATTTATCGTATTACCATCAGTATTTA
GTCAAATTCCATTTGGTGGTTTTTTCTTAACAGTATTTCTTGCACTATTTACATTTGCGACATTAACATCGGCATTTTCT
TTACTAGAGACAGTTGTTTCGGCATTAGCAAATGGCGAACAGGAAAGAAGAACAAAGTTATCATGGATGATCGGTTTCTG
CATTTTCTTAGTAGGTATACCATCAGCGTTATCATTTGGAGTATGGAGTGATATTACGATTTTCGGGAAGAATATTTTTG
ATGCTGTAGACTTCTTATCTAGTAATATATTAATGCCACTTGGAGCACTATTCATTAGTATTTTTGTTTCATTCAAAATG
GAAAAGAAGGTGCTAGAAGCAGAGTTTTTTGTAGGAGGTAATTATGGAAAGAAAGTATTTACTTGTTGGGCGTTTTTACT
TCGATTTGTAGCGCCCCTCGCAATAATTATCGTCTTTTTAAATGTAATAGGGGTTATTTAA

Upstream 100 bases:

>100_bases
CCATTTTTTATTTTATAGAAAAAGAAATGGAGGGTTTATTTGGATAGGTTCATAAAATTTATTTATTTATATAAAAAGAT
TTAATTAGGAGGAAAATAAG

Downstream 100 bases:

>100_bases
CAATAGATGTTATAATATTCAGTAAAAAAAGGTGATGTTTATGGCCAATTTGATAGAAACAGGGAAATACATGAATATTA
GAGGGAAAAAGCTATACGTT

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTLLIGLPLLIAEFMIGRSTQKQAVGAFKSIA
PNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTGQLITPGQNYGALFTETIGNPAWAILGHFAFMFITVWVVSK
GVQNGIEKASKYMLPALFVLFVALIVRSLTLDNAMQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN
KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGGFFLTVFLALFTFATLTSAFS
LLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFGVWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKM
EKKVLEAEFFVGGNYGKKVFTCWAFLLRFVAPLAIIIVFLNVIGVI

Sequences:

>Translated_446_residues
MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTLLIGLPLLIAEFMIGRSTQKQAVGAFKSIA
PNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTGQLITPGQNYGALFTETIGNPAWAILGHFAFMFITVWVVSK
GVQNGIEKASKYMLPALFVLFVALIVRSLTLDNAMQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN
KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGGFFLTVFLALFTFATLTSAFS
LLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFGVWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKM
EKKVLEAEFFVGGNYGKKVFTCWAFLLRFVAPLAIIIVFLNVIGVI
>Mature_446_residues
MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTLLIGLPLLIAEFMIGRSTQKQAVGAFKSIA
PNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTGQLITPGQNYGALFTETIGNPAWAILGHFAFMFITVWVVSK
GVQNGIEKASKYMLPALFVLFVALIVRSLTLDNAMQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN
KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGGFFLTVFLALFTFATLTSAFS
LLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFGVWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKM
EKKVLEAEFFVGGNYGKKVFTCWAFLLRFVAPLAIIIVFLNVIGVI

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=481, Percent_Identity=25.3638253638254, Blast_Score=130, Evalue=4e-30,
Organism=Homo sapiens, GI188528618, Length=434, Percent_Identity=26.036866359447, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI4507041, Length=403, Percent_Identity=24.5657568238213, Blast_Score=124, Evalue=3e-28,
Organism=Homo sapiens, GI171184408, Length=412, Percent_Identity=25.7281553398058, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI171184406, Length=412, Percent_Identity=25.7281553398058, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI171184404, Length=412, Percent_Identity=25.7281553398058, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI7657587, Length=387, Percent_Identity=24.8062015503876, Blast_Score=122, Evalue=9e-28,
Organism=Homo sapiens, GI289191351, Length=404, Percent_Identity=26.4851485148515, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI4557046, Length=404, Percent_Identity=26.4851485148515, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI289191377, Length=404, Percent_Identity=26.4851485148515, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI134304856, Length=413, Percent_Identity=24.9394673123487, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI197276623, Length=380, Percent_Identity=26.0526315789474, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI54607094, Length=380, Percent_Identity=26.0526315789474, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI4507043, Length=382, Percent_Identity=25.130890052356, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI194018524, Length=298, Percent_Identity=26.8456375838926, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI58219014, Length=300, Percent_Identity=25.6666666666667, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI33354281, Length=297, Percent_Identity=23.5690235690236, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI67782317, Length=429, Percent_Identity=22.8438228438228, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI11181770, Length=295, Percent_Identity=25.4237288135593, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI51468073, Length=297, Percent_Identity=24.5791245791246, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI67782313, Length=429, Percent_Identity=22.8438228438228, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI67782315, Length=429, Percent_Identity=22.8438228438228, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI12408638, Length=272, Percent_Identity=25.7352941176471, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI21361693, Length=112, Percent_Identity=33.9285714285714, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI92859670, Length=266, Percent_Identity=24.4360902255639, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI197276625, Length=121, Percent_Identity=35.5371900826446, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI55749589, Length=291, Percent_Identity=24.7422680412371, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI300360519, Length=231, Percent_Identity=25.974025974026, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI289191353, Length=222, Percent_Identity=27.9279279279279, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI5032097, Length=118, Percent_Identity=31.3559322033898, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI218563756, Length=118, Percent_Identity=31.3559322033898, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI6005715, Length=200, Percent_Identity=26.5, Blast_Score=67, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17555248, Length=397, Percent_Identity=24.9370277078086, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25146584, Length=406, Percent_Identity=25.3694581280788, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17554804, Length=477, Percent_Identity=23.6897274633124, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI133952791, Length=172, Percent_Identity=30.8139534883721, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71998244, Length=357, Percent_Identity=24.3697478991597, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17542050, Length=118, Percent_Identity=31.3559322033898, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534083, Length=431, Percent_Identity=20.8816705336427, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI17136952, Length=376, Percent_Identity=24.2021276595745, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI281364394, Length=376, Percent_Identity=23.936170212766, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI28574704, Length=376, Percent_Identity=23.936170212766, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI17136950, Length=376, Percent_Identity=23.936170212766, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI28574702, Length=376, Percent_Identity=23.936170212766, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24762620, Length=415, Percent_Identity=26.2650602409639, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI45551088, Length=427, Percent_Identity=24.824355971897, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24652942, Length=427, Percent_Identity=24.824355971897, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24639514, Length=503, Percent_Identity=23.6580516898608, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI221329674, Length=503, Percent_Identity=23.6580516898608, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24661428, Length=495, Percent_Identity=23.8383838383838, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24582567, Length=479, Percent_Identity=24.8434237995825, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI19921936, Length=498, Percent_Identity=23.8955823293173, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24639516, Length=523, Percent_Identity=22.7533460803059, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI281365034, Length=503, Percent_Identity=23.2604373757455, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=24.5791245791246, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI19921352, Length=509, Percent_Identity=23.3791748526523, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24584353, Length=509, Percent_Identity=23.3791748526523, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI281363702, Length=480, Percent_Identity=22.7083333333333, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI45551183, Length=268, Percent_Identity=27.6119402985075, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI45550877, Length=208, Percent_Identity=30.7692307692308, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281363700, Length=339, Percent_Identity=25.0737463126844, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24654186, Length=286, Percent_Identity=26.5734265734266, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281364136, Length=176, Percent_Identity=30.6818181818182, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24582569, Length=447, Percent_Identity=23.2662192393736, Blast_Score=69, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48645; Mature: 48645

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTLLIGLPLLIA
CCCHHHHHHHHHHHHHHCCCHHCHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
EFMIGRSTQKQAVGAFKSIAPNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTG
HHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QLITPGQNYGALFTETIGNPAWAILGHFAFMFITVWVVSKGVQNGIEKASKYMLPALFVL
CEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVALIVRSLTLDNAMQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEHHHHHHC
KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHCCCCH
FFLTVFLALFTFATLTSAFSLLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKMEKKVLEAEFFVGGNYGKKVF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH
TCWAFLLRFVAPLAIIIVFLNVIGVI
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTLLIGLPLLIA
CCCHHHHHHHHHHHHHHCCCHHCHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
EFMIGRSTQKQAVGAFKSIAPNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTG
HHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QLITPGQNYGALFTETIGNPAWAILGHFAFMFITVWVVSKGVQNGIEKASKYMLPALFVL
CEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVALIVRSLTLDNAMQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEHHHHHHC
KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHCCCCH
FFLTVFLALFTFATLTSAFSLLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKMEKKVLEAEFFVGGNYGKKVF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH
TCWAFLLRFVAPLAIIIVFLNVIGVI
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]