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The map label for this gene is racD [H]

Identifier: 52143230

GI number: 52143230

Start: 2129363

End: 2130061

Strand: Direct

Name: racD [H]

Synonym: BCZK2006

Alternate gene names: 52143230

Gene position: 2129363-2130061 (Clockwise)

Preceding gene: 52143232

Following gene: 52143231

Centisome position: 40.17

GC content: 31.19

Gene sequence:

>699_bases
ATGAAAACGATAGGTTTAATTGGTGGTATGAGTTGGGAATCAACTGCTGAATATTATCGAATCATAAATGAAGAAATAAA
AAGTAGATTAGGTGGGTTACATTCAGCTAAATGTTTAATTAATAGTGTAGACTTTGAAGAGATTGAAGGATTCCAGTCTA
GCGGTGATTGGGATAGTGCAGGAGAAATTCTAGGGAATGCAGCATATTCATTACAAAAGGGAGGAGCAGATTTTATAATT
ATTTGTACAAATACAATGCATAAAGTAGTTGAGAGAATAAAGGAGAATATTCATATCCCAATCTTACATATTGCTGATGC
AACTGCGAAAGAAATTAAAAGGAAAGATATTCAAACGGTTGGTTTGCTTGGAACTAAATATACAATGGAACAAGATTTTT
ATAAGATACGAATAGAAGAAAATCATATAAAAGTAATGGTTCCATCAGAAAAGGATAGAGATAAGATAAATGAAGTAATA
TATACAGAATTGTGTTTAGGAAAAATAACATCTCAATCTAGAGAGTATTATAAAAGAGTTATAGAAAATCTAATACAAGA
AGGGGCCCAAGGAATTATTTTAGGATGTACAGAAATAGGATTATTAATTAAACAGGAAGACGTATCAGTTCCGATATTCG
ACACAACCCATATACATGCAGTTGAAGCAGTTAATTTCGCCTTACGAAATAGATTATAA

Upstream 100 bases:

>100_bases
TTATATTTCAAACGTAAAGCCTTGTTTTATTATGTATAATATACATAATAAAATGTTGTAATTAGCTTTAAAAAATAGTG
TGAGGTAGGTGGTAAGTTTA

Downstream 100 bases:

>100_bases
TTATATTATGTAACCTAGTTCCTGTGTGTGGAAAACATTCAGAAAATATTTTATAATGTAAGTGGTTACATTTAAGGGGG
AATGCGTATGTTTTCAGTTC

Product: aspartate racemase

Products: D-aspartate

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIEGFQSSGDWDSAGEILGNAAYSLQKGGADFII
ICTNTMHKVVERIKENIHIPILHIADATAKEIKRKDIQTVGLLGTKYTMEQDFYKIRIEENHIKVMVPSEKDRDKINEVI
YTELCLGKITSQSREYYKRVIENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTHIHAVEAVNFALRNRL

Sequences:

>Translated_232_residues
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIEGFQSSGDWDSAGEILGNAAYSLQKGGADFII
ICTNTMHKVVERIKENIHIPILHIADATAKEIKRKDIQTVGLLGTKYTMEQDFYKIRIEENHIKVMVPSEKDRDKINEVI
YTELCLGKITSQSREYYKRVIENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTHIHAVEAVNFALRNRL
>Mature_232_residues
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIEGFQSSGDWDSAGEILGNAAYSLQKGGADFII
ICTNTMHKVVERIKENIHIPILHIADATAKEIKRKDIQTVGLLGTKYTMEQDFYKIRIEENHIKVMVPSEKDRDKINEVI
YTELCLGKITSQSREYYKRVIENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTHIHAVEAVNFALRNRL

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=229, Percent_Identity=56.3318777292576, Blast_Score=273, Evalue=7e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: 5.1.1.13

Molecular weight: Translated: 26173; Mature: 26173

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIEGFQSSGDWDSA
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCCCCCCCHH
GEILGNAAYSLQKGGADFIIICTNTMHKVVERIKENIHIPILHIADATAKEIKRKDIQTV
HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHH
GLLGTKYTMEQDFYKIRIEENHIKVMVPSEKDRDKINEVIYTELCLGKITSQSREYYKRV
HCCCCEEEECCCEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTHIHAVEAVNFALRNRL
HHHHHHCCCCEEEEEHHHHCEEEEECCCEEEEECCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIEGFQSSGDWDSA
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCCCCCCCHH
GEILGNAAYSLQKGGADFIIICTNTMHKVVERIKENIHIPILHIADATAKEIKRKDIQTV
HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHH
GLLGTKYTMEQDFYKIRIEENHIKVMVPSEKDRDKINEVIYTELCLGKITSQSREYYKRV
HCCCCEEEECCCEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTHIHAVEAVNFALRNRL
HHHHHHCCCCEEEEEHHHHCEEEEECCCEEEEECCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate

Specific reaction: L-aspartate = D-aspartate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]