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The map label for this gene is ypmQ [H]

Identifier: 52143204

GI number: 52143204

Start: 2153199

End: 2153786

Strand: Direct

Name: ypmQ [H]

Synonym: BCZK2031

Alternate gene names: 52143204

Gene position: 2153199-2153786 (Clockwise)

Preceding gene: 52143207

Following gene: 52143206

Centisome position: 40.62

GC content: 34.18

Gene sequence:

>588_bases
ATGAAGCGTTATCAAAAAGTAATTGGTCTTATGGTTGTATTTTGTCTCTTTGTACTTGCTGGATGTAGTGGATCAGGTTC
AAAGCTTCGTAAACCATTGAATTGGGATTTAGAAACTTTCCAATTTACAAATCAAGATGGAAAGCCATTTGGTACAAAAG
ATTTAAAAGGGAAAGTTTGGGTTGCAGATTTTATGTTCACAAATTGCCAAACAGTTTGTCCGCCAATGACTGCTAATATG
GCAAAACTGCAAAAGATGGCAAAAGAAGAGAAATTAGACGTTCAGTTTGTTTCGTTTAGTGTAGATCCAGACCTAGATAA
GCCAGAGAATTTGAAGGCTTTCATTCAAAAGTTTACAGAGGATACTAGTAACTGGAATTTATTAACGGGGTATTCGTTAG
AAGATATTACAAAGTTTTCAAAAGATAATTTCCAATCACTTGTAGATAAACCTGAAAATGGTCAAGTGGTACATGGTACG
TCATTTTATTTAATTGATCAAAACGGAAAAGTAATGAAAAAGTACAGTGGCATTAGTAATACGCCGTATGAGGACATTAT
ACGTGATATGAAGCGATTAGCAGAATAA

Upstream 100 bases:

>100_bases
TTTCGTGAACAAATGTAGTAAACAATTTTCTCGTAGTGTTAACTTTTGTTATGATAAACATAACCTATTTAAATTTAGGA
AAGAGAAAAGAGGTTTATAA

Downstream 100 bases:

>100_bases
AAAGAAGGGTGCAGATTAAAGCACCCTTCTTTTTTACATTAGTCTATGGATAAAATGTCATGTTGCTGTGGAAGTTTTGG
AGCCCGAATTTCTAACACGC

Product: cytochrome c oxidase Cu(A) center assembly protein

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKRYQKVIGLMVVFCLFVLAGCSGSGSKLRKPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANM
AKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVVHGT
SFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRLAE

Sequences:

>Translated_195_residues
MKRYQKVIGLMVVFCLFVLAGCSGSGSKLRKPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANM
AKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVVHGT
SFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRLAE
>Mature_195_residues
MKRYQKVIGLMVVFCLFVLAGCSGSGSKLRKPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANM
AKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVVHGT
SFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRLAE

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22243; Mature: 22243

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYQKVIGLMVVFCLFVLAGCSGSGSKLRKPLNWDLETFQFTNQDGKPFGTKDLKGKVW
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCEE
VADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTE
EEHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHC
DTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVVHGTSFYLIDQNGKVMKKYSGISN
CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCCHHHHCCCCC
TPYEDIIRDMKRLAE
CCHHHHHHHHHHHCC
>Mature Secondary Structure
MKRYQKVIGLMVVFCLFVLAGCSGSGSKLRKPLNWDLETFQFTNQDGKPFGTKDLKGKVW
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCEE
VADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTE
EEHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHC
DTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVVHGTSFYLIDQNGKVMKKYSGISN
CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCCHHHHCCCCC
TPYEDIIRDMKRLAE
CCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]