Click here to switch to the map view.

The map label for this gene is yaaJ [C]

Identifier: 52143099

GI number: 52143099

Start: 2268315

End: 2269682

Strand: Reverse

Name: yaaJ [C]

Synonym: BCZK2140

Alternate gene names: 52143099

Gene position: 2269682-2268315 (Counterclockwise)

Preceding gene: 52143097

Following gene: 52143098

Centisome position: 42.82

GC content: 38.38

Gene sequence:

>1368_bases
ATGGAGACAGTAAGTACAGTATTAGAACAAATCAATCACTATGTGTGGGGATTACCAACGTTATTGTTACTCGTTGGTAC
TGGTATTATTCTCACAGTGCGTTTAAAAGGTTTACAGTTTAGTAAACTATTATACGCTCACAAACTAGCTTTTAAAAAAT
CAGAAGATACATCTTCCTCTGGAGATATTAGCCACTTCCAAGCGCTTATGACAGCTATGGCGGCAACGATTGGTATGGGA
AATATAGCTGGTGTTGCAACTGCTGTGACGATCGGTGGACCTGGTGCAATCTTTTGGATGTGGATTACTGCTTTGTTTGG
TATGGCAACAAAATATGCCGAAGCAATTCTTGCGGTGAAATACCGTGTCAGTAATGAAAATGGTGAATATTCAGGTGGAC
CCATGTACTATTTAGAACGTGGTTTAGGTAAGAAATGGCTTGCAGTTTTATTCGCTATATTCGGTACAACTGCTTCTTTC
GGTATCGGTAATATGGTGCAATCTAATTCAGTTGCAGAGGCAATGCGAATTAATTTCTCTTTCCCCCCTGCTTTAACTGG
TATAGTAATGTCATTTTTAATCGCTATCGTTATTTTAGGCGGTGTAAAAAAAATCGGGAAAGTGACAGGGTATGTCGTTC
CTATTAAAGCTTTCTTTTATATCATTGCTGGTCTTATTATTATTTTCTATCACTACGATCAAATTCCTGAAGCATTTTCA
CTTATTTTTTCTGGTGCATTTAACGGTACTGCAGCGGCTGGTGGTTTTATCGGTGCCACAGTTGCATCAGCTATTCAAAT
TGGAATGGCGCGCGGCGTATTTGCGAACGAAGCTGGTTTAGGGAGTGCCCCTATTGCAGCGGCGGCGGCAAAAACAGATT
CTCCTGCAAAGCAAGCTTTAGTTTCAATGACTGGTACTTTTCTAGATACTTTTATTGTATGTACAATTACAGGACTTGTA
TTAATTACTACAGGTGCTTGGAAATCTGGTAAAACTGGCGTTGAAGCTACAACACTTGCGTTTCAATCTGTATTCGGTAC
TGCAGGTAGTATGATTCTCGGTATCGCAATTATTTTATTTGCCTACTCTACTATTTTAGGGTGGTCGTATTATGGAGAAA
AGTGTGTAGCATATTTATTTGGAGAAGGTGCTGTTCGCTATTATAAAGCAATCTTTATAGTAATGATTGCTATTGGTGCG
AATTTAAAGCTAGGAATCGTATGGACATTTGCTGATATTGCAAATGGACTTATGGCAATTCCAAACTTAATTGGTCTTAT
TGGGTTAAGTGGTATTGTTGTTGCTGAAACGAATCGCTTTTTACAAGCAGAGAAATTGAAAGAAAATAATAAAAAACAGG
CAAGTTAA

Upstream 100 bases:

>100_bases
TGCCGATTTGTATCGGTTTATTTTTCTATCCCTTGTTTCTCCAGAGACCATTTCATTTACTTGAAGTGGTTTTTATTTTT
TCTAAAAAAGGAGAATAAAG

Downstream 100 bases:

>100_bases
TCTAAAAAAAGGAATGACTCATACATAATGAGCATTCCTTTTTTCGTTTTCTTACTCAGTAAATACCATTAAAAATATAT
TTATATCAATCTTTCCCTTT

Product: Na(+)-linked D-alanine glycine permease

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
METVSTVLEQINHYVWGLPTLLLLVGTGIILTVRLKGLQFSKLLYAHKLAFKKSEDTSSSGDISHFQALMTAMAATIGMG
NIAGVATAVTIGGPGAIFWMWITALFGMATKYAEAILAVKYRVSNENGEYSGGPMYYLERGLGKKWLAVLFAIFGTTASF
GIGNMVQSNSVAEAMRINFSFPPALTGIVMSFLIAIVILGGVKKIGKVTGYVVPIKAFFYIIAGLIIIFYHYDQIPEAFS
LIFSGAFNGTAAAGGFIGATVASAIQIGMARGVFANEAGLGSAPIAAAAAKTDSPAKQALVSMTGTFLDTFIVCTITGLV
LITTGAWKSGKTGVEATTLAFQSVFGTAGSMILGIAIILFAYSTILGWSYYGEKCVAYLFGEGAVRYYKAIFIVMIAIGA
NLKLGIVWTFADIANGLMAIPNLIGLIGLSGIVVAETNRFLQAEKLKENNKKQAS

Sequences:

>Translated_455_residues
METVSTVLEQINHYVWGLPTLLLLVGTGIILTVRLKGLQFSKLLYAHKLAFKKSEDTSSSGDISHFQALMTAMAATIGMG
NIAGVATAVTIGGPGAIFWMWITALFGMATKYAEAILAVKYRVSNENGEYSGGPMYYLERGLGKKWLAVLFAIFGTTASF
GIGNMVQSNSVAEAMRINFSFPPALTGIVMSFLIAIVILGGVKKIGKVTGYVVPIKAFFYIIAGLIIIFYHYDQIPEAFS
LIFSGAFNGTAAAGGFIGATVASAIQIGMARGVFANEAGLGSAPIAAAAAKTDSPAKQALVSMTGTFLDTFIVCTITGLV
LITTGAWKSGKTGVEATTLAFQSVFGTAGSMILGIAIILFAYSTILGWSYYGEKCVAYLFGEGAVRYYKAIFIVMIAIGA
NLKLGIVWTFADIANGLMAIPNLIGLIGLSGIVVAETNRFLQAEKLKENNKKQAS
>Mature_455_residues
METVSTVLEQINHYVWGLPTLLLLVGTGIILTVRLKGLQFSKLLYAHKLAFKKSEDTSSSGDISHFQALMTAMAATIGMG
NIAGVATAVTIGGPGAIFWMWITALFGMATKYAEAILAVKYRVSNENGEYSGGPMYYLERGLGKKWLAVLFAIFGTTASF
GIGNMVQSNSVAEAMRINFSFPPALTGIVMSFLIAIVILGGVKKIGKVTGYVVPIKAFFYIIAGLIIIFYHYDQIPEAFS
LIFSGAFNGTAAAGGFIGATVASAIQIGMARGVFANEAGLGSAPIAAAAAKTDSPAKQALVSMTGTFLDTFIVCTITGLV
LITTGAWKSGKTGVEATTLAFQSVFGTAGSMILGIAIILFAYSTILGWSYYGEKCVAYLFGEGAVRYYKAIFIVMIAIGA
NLKLGIVWTFADIANGLMAIPNLIGLIGLSGIVVAETNRFLQAEKLKENNKKQAS

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=452, Percent_Identity=36.7256637168142, Blast_Score=254, Evalue=9e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 48063; Mature: 48063

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METVSTVLEQINHYVWGLPTLLLLVGTGIILTVRLKGLQFSKLLYAHKLAFKKSEDTSSS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
GDISHFQALMTAMAATIGMGNIAGVATAVTIGGPGAIFWMWITALFGMATKYAEAILAVK
CCHHHHHHHHHHHHHHHCCCCHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHE
YRVSNENGEYSGGPMYYLERGLGKKWLAVLFAIFGTTASFGIGNMVQSNSVAEAMRINFS
EEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHCCCCCHHHCCHHHHHHEECCC
FPPALTGIVMSFLIAIVILGGVKKIGKVTGYVVPIKAFFYIIAGLIIIFYHYDQIPEAFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIFSGAFNGTAAAGGFIGATVASAIQIGMARGVFANEAGLGSAPIAAAAAKTDSPAKQAL
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCHHHHHH
VSMTGTFLDTFIVCTITGLVLITTGAWKSGKTGVEATTLAFQSVFGTAGSMILGIAIILF
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
AYSTILGWSYYGEKCVAYLFGEGAVRYYKAIFIVMIAIGANLKLGIVWTFADIANGLMAI
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHH
PNLIGLIGLSGIVVAETNRFLQAEKLKENNKKQAS
HHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
METVSTVLEQINHYVWGLPTLLLLVGTGIILTVRLKGLQFSKLLYAHKLAFKKSEDTSSS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
GDISHFQALMTAMAATIGMGNIAGVATAVTIGGPGAIFWMWITALFGMATKYAEAILAVK
CCHHHHHHHHHHHHHHHCCCCHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHE
YRVSNENGEYSGGPMYYLERGLGKKWLAVLFAIFGTTASFGIGNMVQSNSVAEAMRINFS
EEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHCCCCCHHHCCHHHHHHEECCC
FPPALTGIVMSFLIAIVILGGVKKIGKVTGYVVPIKAFFYIIAGLIIIFYHYDQIPEAFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIFSGAFNGTAAAGGFIGATVASAIQIGMARGVFANEAGLGSAPIAAAAAKTDSPAKQAL
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCHHHHHH
VSMTGTFLDTFIVCTITGLVLITTGAWKSGKTGVEATTLAFQSVFGTAGSMILGIAIILF
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
AYSTILGWSYYGEKCVAYLFGEGAVRYYKAIFIVMIAIGANLKLGIVWTFADIANGLMAI
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHH
PNLIGLIGLSGIVVAETNRFLQAEKLKENNKKQAS
HHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]