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The map label for this gene is ybdK [H]

Identifier: 52142459

GI number: 52142459

Start: 2900819

End: 2901814

Strand: Reverse

Name: ybdK [H]

Synonym: BCZK2784

Alternate gene names: 52142459

Gene position: 2901814-2900819 (Counterclockwise)

Preceding gene: 52142456

Following gene: 52142458

Centisome position: 54.74

GC content: 26.71

Gene sequence:

>996_bases
ATGAACTTAAAGAAAAAATATCAGTTACTATTATTCTCCGCTATTATTAGCGTACCACTGTTATTGTTGTCGATTAGTAT
CTTTGTATCAGTTATTTATAATGCTGTCTTTAAAACTAAAAATAAGAACATCCCTTTTCACGAATCCTATGCATATCCTA
CTATGTTAATCATATTTTTGTTATCATTATTAGTATTAGCTTTTGTATTTTCAAGGTCGATTAACACCGTATTAAATAAA
ATTAATATATTAAATCAAACAATTCGAGATTTAGCGAGTGATAAAAAAATCCCTAATATAATAGATGTTAAAAGCGATGA
TGAAATGGGAGAACTGATTAAATCAGTAAACTTGCTTATAGAAAGAACAACTTATCGAGAATTGGAACTACAACAACAGG
AACAAATAAAAAAGGAACTATTAAATAAATTACGGCATGATATTAATACACCCTTAACAGCGGTTAGATTACAATTATAT
TATTTAGAAGGTGAGTACAAGGAACAAGCACCAGTACTTGAATCACTGTATGAGCAGATACAATATATAAGTGATTTAAC
TAACGAATTTAATATGCAATCTACCGAAACCTTAGAGAATACTTATATTGTGCATGATGAAGTGAATATACATAATTTAA
TAGAAAATATGATTAAAAAATGGAGCTATTTGTATAGCATTCATAAAATTGAATTAGTATATAATCCACAAGATAAAGAG
TTGATATGGAATAGTAATGAATTATGGATTCAAAGGCTATTTGATAATATTTTTCAAAATGTCCTTAAACATTCAAAAGC
TAAAAAACTTAAAATCATTATAGATGAAGATATTGTTTATTTTAGAGATAATGGGATTGGGTTCGATATAAATAGTAAAG
GAACAGGACTTGGTTTGAAAAATATTGAAGATATATCAAAAATGTTCGATATCAAATACACTTTACAATCAAATAGTGAG
GGGACTATGTTTTCATTTGAAAATACTAAAGTTTAG

Upstream 100 bases:

>100_bases
TACATATAAGGAAAATCAGAACCAAAATTGATGATAAAACAGGTGATATTATTCAGAACATATATGGAGAAGGGTATAGA
TTAAATACCTATATGAAGAA

Downstream 100 bases:

>100_bases
AGAAAATTACATAAAACCACTACCTCCCAACCATACTAATAAAATGTGTTGGAGGTGAGTTTAATGGACAAAAAAGATTT
TGAAAAAGTGTATAATGATT

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFLLSLLVLAFVFSRSINTVLNK
INILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLIERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLY
YLEGEYKEQAPVLESLYEQIQYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIENMIKKWSYLYSIHKIELVYNPQDKE
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLKNIEDISKMFDIKYTLQSNSE
GTMFSFENTKV

Sequences:

>Translated_331_residues
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFLLSLLVLAFVFSRSINTVLNK
INILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLIERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLY
YLEGEYKEQAPVLESLYEQIQYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIENMIKKWSYLYSIHKIELVYNPQDKE
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLKNIEDISKMFDIKYTLQSNSE
GTMFSFENTKV
>Mature_331_residues
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFLLSLLVLAFVFSRSINTVLNK
INILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLIERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLY
YLEGEYKEQAPVLESLYEQIQYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIENMIKKWSYLYSIHKIELVYNPQDKE
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLKNIEDISKMFDIKYTLQSNSE
GTMFSFENTKV

Specific function: Member of the two-component regulatory system ybdK/ybdJ. Probably activates ybdJ by phosphorylation [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 38780; Mature: 38780

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
LSLLVLAFVFSRSINTVLNKINILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHH
ERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLYYLEGEYKEQAPVLESLYEQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCCHHHHHHHHHH
QYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIENMIKKWSYLYSIHKIELVYNPQDKE
HHHHHHHHHCCCCHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCC
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLK
EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCEEEEECCCCCCCCCC
NIEDISKMFDIKYTLQSNSEGTMFSFENTKV
HHHHHHHHHHEEEEEECCCCCCEEECCCCCC
>Mature Secondary Structure
MNLKKKYQLLLFSAIISVPLLLLSISIFVSVIYNAVFKTKNKNIPFHESYAYPTMLIIFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
LSLLVLAFVFSRSINTVLNKINILNQTIRDLASDKKIPNIIDVKSDDEMGELIKSVNLLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHH
ERTTYRELELQQQEQIKKELLNKLRHDINTPLTAVRLQLYYLEGEYKEQAPVLESLYEQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCCHHHHHHHHHH
QYISDLTNEFNMQSTETLENTYIVHDEVNIHNLIENMIKKWSYLYSIHKIELVYNPQDKE
HHHHHHHHHCCCCHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCC
LIWNSNELWIQRLFDNIFQNVLKHSKAKKLKIIIDEDIVYFRDNGIGFDINSKGTGLGLK
EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCEEEEECCCCCCCCCC
NIEDISKMFDIKYTLQSNSEGTMFSFENTKV
HHHHHHHHHHEEEEEECCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]