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The map label for this gene is staD [H]

Identifier: 52142361

GI number: 52142361

Start: 3009499

End: 3010431

Strand: Reverse

Name: staD [H]

Synonym: BCZK2881

Alternate gene names: 52142361

Gene position: 3010431-3009499 (Counterclockwise)

Preceding gene: 52142360

Following gene: 52142365

Centisome position: 56.79

GC content: 36.44

Gene sequence:

>933_bases
ATGGTAAGAAAAGGGGGCACTTATATGCTAACAAATGATTTAGATTTCCGATTAGAACCACGTTTAAAAGAACTGTATGA
ACAACATAAAATAAGAGCGCAGAAGATAGACTGGGGTTATCATGAATTTTTACCATGGGATAAGGGAATGGACTTTAAAA
GAGTTCCTTGGGATGAAAGTCAAGTTACTCTCCCTTCTGGTGTAATTACGGCCATTGAAACAGCTTTATTAACAGAAGTG
AATTTACCGTGGTTTACAACGTATTTATCTGCAACTTTTAAAGGTTCCCTTTCTGTTATTACAGACTTTATTCATACTTG
GACCTCAGAAGAGGATCAGCATTCGAATTTATTAGAGACATATTTACTACTCACTCGAAGTGTAAACCCTAAACGTATAC
ATGAATTAAGAAAATCAGTCGTTGAGTGTGGATTTGAGCCTGATTTTCATACACCAATCGAAGCCATGACGTATACGACG
CTACAAGAACTTGCAACAATGGTGTTTTACAATAATGTAGCTAAGGTGGCAAGTAAGCATGATCCAGATCTTGCTACATT
ATTACGCCGTCTAGCAAAAGATGAAACACTTCATTATGCGTTTTATCGAGACGTTATTCGAACACATTTAGAATTGGAAC
CAAATTATTGCTACTATATTGCCAATGTGATTAGGAATTTTAAAATGCCAGGTGCCGTCATGCCTGATTTTGAAAATAGA
ATGGCTGTGATTGCAAAAGAAGCAAACTATGGGCCACTACAATATTTTGATCAAGTACTTGATGTAGTGGTTGAGTATTG
GGGGTTAAAAGACTTACGACCAATTGCCCCTCTAGCAGAAAAAGCAAGAATTGAGATTTTAGAGTATCATATAAGATTGA
AAAAAATACGGGATCGATTTGGCCGTTTTCAAGGAAAAACGGATCTACGTTAA

Upstream 100 bases:

>100_bases
TAAAGAGTTTTGTTACAAGTTTGTTATGTTGGATTTAATAAAAAGGAAAGTAATATTTATTTGTAGAAAATTTTTAGAGA
TAAAAATAAGCTGAATATTC

Downstream 100 bases:

>100_bases
TGAGTAGAGATTTCAGAATATACGCGTGGGAATTCCCTTTTCTTTTATTTGAAATCTAGAACGCTCTCTATTATTTTGAG
GCTGTTTTCCTTAATTTAAC

Product: acyl-[acyl-carrier protein] desaturase

Products: NA

Alternate protein names: DES; Putative acyl-ACP desaturase desA1 [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MVRKGGTYMLTNDLDFRLEPRLKELYEQHKIRAQKIDWGYHEFLPWDKGMDFKRVPWDESQVTLPSGVITAIETALLTEV
NLPWFTTYLSATFKGSLSVITDFIHTWTSEEDQHSNLLETYLLLTRSVNPKRIHELRKSVVECGFEPDFHTPIEAMTYTT
LQELATMVFYNNVAKVASKHDPDLATLLRRLAKDETLHYAFYRDVIRTHLELEPNYCYYIANVIRNFKMPGAVMPDFENR
MAVIAKEANYGPLQYFDQVLDVVVEYWGLKDLRPIAPLAEKARIEILEYHIRLKKIRDRFGRFQGKTDLR

Sequences:

>Translated_310_residues
MVRKGGTYMLTNDLDFRLEPRLKELYEQHKIRAQKIDWGYHEFLPWDKGMDFKRVPWDESQVTLPSGVITAIETALLTEV
NLPWFTTYLSATFKGSLSVITDFIHTWTSEEDQHSNLLETYLLLTRSVNPKRIHELRKSVVECGFEPDFHTPIEAMTYTT
LQELATMVFYNNVAKVASKHDPDLATLLRRLAKDETLHYAFYRDVIRTHLELEPNYCYYIANVIRNFKMPGAVMPDFENR
MAVIAKEANYGPLQYFDQVLDVVVEYWGLKDLRPIAPLAEKARIEILEYHIRLKKIRDRFGRFQGKTDLR
>Mature_310_residues
MVRKGGTYMLTNDLDFRLEPRLKELYEQHKIRAQKIDWGYHEFLPWDKGMDFKRVPWDESQVTLPSGVITAIETALLTEV
NLPWFTTYLSATFKGSLSVITDFIHTWTSEEDQHSNLLETYLLLTRSVNPKRIHELRKSVVECGFEPDFHTPIEAMTYTT
LQELATMVFYNNVAKVASKHDPDLATLLRRLAKDETLHYAFYRDVIRTHLELEPNYCYYIANVIRNFKMPGAVMPDFENR
MAVIAKEANYGPLQYFDQVLDVVVEYWGLKDLRPIAPLAEKARIEILEYHIRLKKIRDRFGRFQGKTDLR

Specific function: Could be involved in mycobacterial fatty acid biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005067
- InterPro:   IPR009078
- InterPro:   IPR012348 [H]

Pfam domain/function: PF03405 FA_desaturase_2 [H]

EC number: NA

Molecular weight: Translated: 36417; Mature: 36417

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKGGTYMLTNDLDFRLEPRLKELYEQHKIRAQKIDWGYHEFLPWDKGMDFKRVPWDES
CCCCCCCEEEECCCCCEECHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCC
QVTLPSGVITAIETALLTEVNLPWFTTYLSATFKGSLSVITDFIHTWTSEEDQHSNLLET
CEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHH
YLLLTRSVNPKRIHELRKSVVECGFEPDFHTPIEAMTYTTLQELATMVFYNNVAKVASKH
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPDLATLLRRLAKDETLHYAFYRDVIRTHLELEPNYCYYIANVIRNFKMPGAVMPDFENR
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
MAVIAKEANYGPLQYFDQVLDVVVEYWGLKDLRPIAPLAEKARIEILEYHIRLKKIRDRF
EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GRFQGKTDLR
HHCCCCCCCC
>Mature Secondary Structure
MVRKGGTYMLTNDLDFRLEPRLKELYEQHKIRAQKIDWGYHEFLPWDKGMDFKRVPWDES
CCCCCCCEEEECCCCCEECHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCC
QVTLPSGVITAIETALLTEVNLPWFTTYLSATFKGSLSVITDFIHTWTSEEDQHSNLLET
CEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHH
YLLLTRSVNPKRIHELRKSVVECGFEPDFHTPIEAMTYTTLQELATMVFYNNVAKVASKH
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPDLATLLRRLAKDETLHYAFYRDVIRTHLELEPNYCYYIANVIRNFKMPGAVMPDFENR
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
MAVIAKEANYGPLQYFDQVLDVVVEYWGLKDLRPIAPLAEKARIEILEYHIRLKKIRDRF
EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GRFQGKTDLR
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12368430; 12218036 [H]