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The map label for this gene is araC [H]

Identifier: 52142266

GI number: 52142266

Start: 3106472

End: 3107299

Strand: Reverse

Name: araC [H]

Synonym: BCZK2976

Alternate gene names: 52142266

Gene position: 3107299-3106472 (Counterclockwise)

Preceding gene: 52142265

Following gene: 52142267

Centisome position: 58.62

GC content: 38.16

Gene sequence:

>828_bases
GTGAAGTTGGACGTGAATGAGTTAGCAGAGTATCTTGCCAATAACCCTTTCCGAGTAGAAGGAGTATATCGTTATGCTAA
AAATCCAGGTGTGCCTTGTGCTGAGTCTACAGATTCTTTCCCAGGATTTGTATTCCCACTTGCAGGGAAGACGCAATTTC
AATTTAATGGTACGCCTTATATCCTTTCCCCAGGAAAAGTTATACATGGGGGTGCAAAAATGACATTAGCCCATAAAATG
CTTGGTGAAATAAACTGGGAATATATTCTTGTTTTATATCGGATAAGCAATTCAGAACGAGAAGACTCTGGCTTTACTCA
TCAGCATTTTGAATTGTTAACAGGACAATCTCCTCGTCTTGTTGAAGTACTTATGCGTCTTTGGGATGTGTATAATCAGC
GTGGAGGCATTTCGATGCTTCAGACCGAAATGCTGTTTCGCGAAGCGTTGAATGAAGCTTTATTAAGTGTTGCCAATAGA
GAAAACGACTATGAGTCGCATACTTTATTCGAACGAATATCTAGTTACGTTCGTGAATACTATTATAAAGATATTACAAT
ACATACGCTTACAGAACAAAATAATGTTAATCGAAATCGTCTTTCTTACGTGTTTAGAAAGCATGCAGGTATGGGGCCAG
CAGAATATTTATTGAACTATCGTATAAAGATGGCTCAAAAAATGTTATGTACAAGTGGTGTGTCTGTACAACAAATTGCG
CAGGCTGTTGGAATCGCAGACCCTTTTTATTTTAGTAGAGTTTTCAAGAAGCGAGTTGGCATTTCGCCTACTAAATATCG
TGAGAAGTTCATCAATAATCCATACTAA

Upstream 100 bases:

>100_bases
TTAAGTCGTATGTACTATTTTTAGTTTAGCGTTGCCCAGAATGTACACCAATTAATCTCGCGAATTACAAGAAAACTATT
ATTGAAATGAGGCTTGCATT

Downstream 100 bases:

>100_bases
TGTCAACAGGGGTCCATTCTTATTTGAAAATCACTGTTCTATACTTATGGAGAGTTAAAGGAAACATTGGATTGAAAGTA
CTTTCATTGAAATCACTCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MKLDVNELAEYLANNPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLAGKTQFQFNGTPYILSPGKVIHGGAKMTLAHKM
LGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRLVEVLMRLWDVYNQRGGISMLQTEMLFREALNEALLSVANR
ENDYESHTLFERISSYVREYYYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVSVQQIA
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY

Sequences:

>Translated_275_residues
MKLDVNELAEYLANNPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLAGKTQFQFNGTPYILSPGKVIHGGAKMTLAHKM
LGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRLVEVLMRLWDVYNQRGGISMLQTEMLFREALNEALLSVANR
ENDYESHTLFERISSYVREYYYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVSVQQIA
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY
>Mature_275_residues
MKLDVNELAEYLANNPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLAGKTQFQFNGTPYILSPGKVIHGGAKMTLAHKM
LGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRLVEVLMRLWDVYNQRGGISMLQTEMLFREALNEALLSVANR
ENDYESHTLFERISSYVREYYYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVSVQQIA
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=281, Percent_Identity=24.1992882562278, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788725, Length=102, Percent_Identity=30.3921568627451, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 31761; Mature: 31761

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDVNELAEYLANNPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLAGKTQFQFNGTPY
CCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCE
ILSPGKVIHGGAKMTLAHKMLGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRL
EECCCCEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCHH
VEVLMRLWDVYNQRGGISMLQTEMLFREALNEALLSVANRENDYESHTLFERISSYVREY
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
YYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVSVQQIA
HHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY
HHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MKLDVNELAEYLANNPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLAGKTQFQFNGTPY
CCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCE
ILSPGKVIHGGAKMTLAHKMLGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRL
EECCCCEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCHH
VEVLMRLWDVYNQRGGISMLQTEMLFREALNEALLSVANRENDYESHTLFERISSYVREY
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
YYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVSVQQIA
HHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QAVGIADPFYFSRVFKKRVGISPTKYREKFINNPY
HHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]