Click here to switch to the map view.

The map label for this gene is ytbD [H]

Identifier: 52142141

GI number: 52142141

Start: 3234145

End: 3235392

Strand: Reverse

Name: ytbD [H]

Synonym: BCZK3102

Alternate gene names: 52142141

Gene position: 3235392-3234145 (Counterclockwise)

Preceding gene: 52142139

Following gene: 52142140

Centisome position: 61.03

GC content: 37.1

Gene sequence:

>1248_bases
ATGATAGGAATTATAGGGAAGAGGGGGAATCAATTGAATTCATATACAGCATCGTCTTCAGAAGTTCAGACGAATCGAAG
AAGTATATTTGCGTTATTAGCGCTAGCAATTAGTGCGTTCGGGATTGGTACAACGGAATTTGTTAGTGTCGGTTTATTAC
CATCTATTTCGGAAGATTTACATGTGTCGGTGACAACAGCTGGTTTAACAGTTTCTTTATATGCGTTAGGCGTAGCATTT
GGTGCTCCAGTATTAACGTCGTTAACAGCTAATATGTCACGAAAAACGTTATTAATGTGGATTATGATTATTTTCATTAT
TGGTAACGGAATTGCAGCTGTCGCAACAAGCTTTACTGTATTACTTATTGCGCGAATTGTTTCTGCACTTTCGCATGGTG
TGTTTATGTCAATTGGTTCAACGATTGCTGCGGCACTCGTACCAGAAAATAAACGTGCTAGCGCGATTGCCATTATGTTT
ACTGGTGTTACAGTCGCAACTATTACAGGTGCACCAATTGGAACATTTATTGGTCAACAATTTGGCTGGAGAACATCATT
TTTAGCAATTGTGGTAATTGGAATTATTGCCTTAATCGCAAATAGTATTCTCATTCCATCTAATATGAAAAAAGGTACGT
CTGTATCATTCCGCGATCAGTTCAAATTGATTACGAACGGAAGACTGTTACTAGTTTTCATCATTACTGCATTAGGATAT
GGGGGAACATTCGTAACATTTACGTATTTATCTCCGTTATTACAAGAAGTAACAGGGTTTAAAGCTAATACGGTTACTAT
CATTTTATTAGTATATGGAATCGCTATTGCAATAGGGAATGTGATTGGCGGGAAATTATCGAATCATAATCCAATTCGAG
CGCTATTTTACATGTTCTTTATTCAAGCGATTATATTATTTGTTTTAACATTTACAGCGCCATTTAAAGTAGCTGGGTTA
ATTACAATTATTTTTATGGGACTATTCGCATTTATGAATGTTCCAGGGTTACAAGTATATGTCGTAATGTTAGCTGAACG
ATTTGTACCGAGTGCTGTCGATGTTGCATCGGCAATTAATATTGCGGCGTTTAATGCTGGGATTGCTCTTGGTGCTTATT
TAGGCGGTATGGTAACGAATTCGTTAGGGTTAATTCATACAGCTTGGGTAGGCGGCATTATGGTAGTAGGTGCTGTTATT
TTAACAGCGTGGAGTATGAGATTAGAAAAACGAGATCAAGTAAAATAA

Upstream 100 bases:

>100_bases
AAGTGCGTTCTTTAAAAAGAGAATGAAACTATTCATAATAGCGTTTGTAGAGATTAAATATATGTTTTGAAAGATAAAAG
GGCCTTTTTATCGCACTATT

Downstream 100 bases:

>100_bases
AAGGAGAGAAAATAAAATGAAAAATTTACAAAGTACAACAACATTGCATAACGGTGTAGAAATGCCTTGGTTCGGTTTAG
GCGTATTTAAAGTAGAAGAA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDLHVSVTTAGLTVSLYALGVAF
GAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMF
TGVTVATITGAPIGTFIGQQFGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLITNGRLLLVFIITALGY
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGL
ITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGMVTNSLGLIHTAWVGGIMVVGAVI
LTAWSMRLEKRDQVK

Sequences:

>Translated_415_residues
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDLHVSVTTAGLTVSLYALGVAF
GAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMF
TGVTVATITGAPIGTFIGQQFGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLITNGRLLLVFIITALGY
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGL
ITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGMVTNSLGLIHTAWVGGIMVVGAVI
LTAWSMRLEKRDQVK
>Mature_415_residues
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDLHVSVTTAGLTVSLYALGVAF
GAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMF
TGVTVATITGAPIGTFIGQQFGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLITNGRLLLVFIITALGY
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGL
ITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGMVTNSLGLIHTAWVGGIMVVGAVI
LTAWSMRLEKRDQVK

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=335, Percent_Identity=37.3134328358209, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1786595, Length=359, Percent_Identity=31.7548746518106, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI1787808, Length=390, Percent_Identity=32.5641025641026, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI145693198, Length=367, Percent_Identity=26.4305177111717, Blast_Score=115, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43846; Mature: 43846

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS00589 PTS_HPR_SER ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDL
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
HVSVTTAGLTVSLYALGVAFGAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTV
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMFTGVTVATITGAPIGTFIGQQ
HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECEEEEEECCCCHHHHHHHH
FGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLITNGRLLLVFIITALGY
CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCHHHCEEEECCCCHHHHHHHHHHCC
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFF
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
IQAIILFVLTFTAPFKVAGLITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAIN
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
IAAFNAGIALGAYLGGMVTNSLGLIHTAWVGGIMVVGAVILTAWSMRLEKRDQVK
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDL
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
HVSVTTAGLTVSLYALGVAFGAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTV
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMFTGVTVATITGAPIGTFIGQQ
HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECEEEEEECCCCHHHHHHHH
FGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLITNGRLLLVFIITALGY
CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCHHHCEEEECCCCHHHHHHHHHHCC
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFF
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
IQAIILFVLTFTAPFKVAGLITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAIN
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
IAAFNAGIALGAYLGGMVTNSLGLIHTAWVGGIMVVGAVILTAWSMRLEKRDQVK
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]