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The map label for this gene is ytcD [H]

Identifier: 52142113

GI number: 52142113

Start: 3258636

End: 3258983

Strand: Direct

Name: ytcD [H]

Synonym: BCZK3129

Alternate gene names: 52142113

Gene position: 3258636-3258983 (Clockwise)

Preceding gene: 52142117

Following gene: 52142111

Centisome position: 61.47

GC content: 35.92

Gene sequence:

>348_bases
TTGAGGTACCTTTGGAGGTGTTATATGAATCAAAATGATAACTGTCCAATTGCAACAACACTCGATGTAATCGGCGGAAA
ATGGAAAGTTCATATTTTATGTGTTTTGATGGATGGAAAAATGCGAACAAATGAAATCCGACGAGAAATCCCAAACATTA
CGCAAAAAGTTCTGACTCAACAACTTCGGCAACTTGAAGCTGATGGGATTATCCATCGTACTGTATATCAAGAAGTACCA
CCAAAGGTTGAGTACACAATAAGCGAATATGGGAAATCTTTAATGCAAATTATGAATGAACTATTTGAGTGGGGAAAAGA
TCATCAGCTCAAAAGATTAAATGACTAA

Upstream 100 bases:

>100_bases
CATTTTCCATCCCCTTTATAAATGAATCAATCCTTTACATATTAGTATGAATGCATTACATATAATTGAAAAGTACGTAC
TTTCAGGTGCTATAGGAACC

Downstream 100 bases:

>100_bases
CAAAACATTACCGTCTTTATTAAATTTTCTACATTCATATTAGTAGTTTAATATTTCTACTGAAATTTTATAATAGAGAT
TCTCCAACAGCTCGTAATTT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MRYLWRCYMNQNDNCPIATTLDVIGGKWKVHILCVLMDGKMRTNEIRREIPNITQKVLTQQLRQLEADGIIHRTVYQEVP
PKVEYTISEYGKSLMQIMNELFEWGKDHQLKRLND

Sequences:

>Translated_115_residues
MRYLWRCYMNQNDNCPIATTLDVIGGKWKVHILCVLMDGKMRTNEIRREIPNITQKVLTQQLRQLEADGIIHRTVYQEVP
PKVEYTISEYGKSLMQIMNELFEWGKDHQLKRLND
>Mature_115_residues
MRYLWRCYMNQNDNCPIATTLDVIGGKWKVHILCVLMDGKMRTNEIRREIPNITQKVLTQQLRQLEADGIIHRTVYQEVP
PKVEYTISEYGKSLMQIMNELFEWGKDHQLKRLND

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=92, Percent_Identity=34.7826086956522, Blast_Score=73, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13695; Mature: 13695

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLWRCYMNQNDNCPIATTLDVIGGKWKVHILCVLMDGKMRTNEIRREIPNITQKVLTQ
CCCEEEEECCCCCCCCCEEHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
QLRQLEADGIIHRTVYQEVPPKVEYTISEYGKSLMQIMNELFEWGKDHQLKRLND
HHHHHHHCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRYLWRCYMNQNDNCPIATTLDVIGGKWKVHILCVLMDGKMRTNEIRREIPNITQKVLTQ
CCCEEEEECCCCCCCCCEEHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
QLRQLEADGIIHRTVYQEVPPKVEYTISEYGKSLMQIMNELFEWGKDHQLKRLND
HHHHHHHCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]