Click here to switch to the map view.

The map label for this gene is yizB [H]

Identifier: 52141461

GI number: 52141461

Start: 3923201

End: 3923533

Strand: Reverse

Name: yizB [H]

Synonym: BCZK3787

Alternate gene names: 52141461

Gene position: 3923533-3923201 (Counterclockwise)

Preceding gene: 52141460

Following gene: 52141462

Centisome position: 74.02

GC content: 39.34

Gene sequence:

>333_bases
ATGTCGACAAGTCAAATGCTGAAAGGGATTTTAGAAGGATGTTTACTTGCTATTATTTCTGAAGGTGAAATATACGGTTA
TGAAATGAGTGAGAAGCTAGCAAAGTATGGCTTTACAATGGCGAGTGAGGGAAGTATTTATCCGTTATTAATACGAATGC
AAAAGGAAGGATTCATAAAAAGTGTAATGAAGGAATCCCCATCTGGTCCAAAACGGAAGTATTACACGTTAACAGAAGAT
GGCGAAGATGCACTGGATGAATTTATGGATCGCTGGGAAGCGATGCAAAGTAGTGTGGAACGTCTACTTGAAGGGAAGGG
GAGAAGAAGATAA

Upstream 100 bases:

>100_bases
CTATCTTGTTTTGCAAAATAGTCTTTGCTATACTATTTTGTAAAGCAAGATACTTACGCTTATCTATCTTGTAAAACAAG
ATAGTAGGAGGATTTGAATT

Downstream 100 bases:

>100_bases
TGCTATCAAATGAAGCACGAAAGTTTTTATTAGATATGAGGTTGTTTTTGACTGCAAAGAGTGTGAAAGAAAGCGATATT
GAAAGCTTTATTGAAGACGC

Product: PadR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSTSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFIKSVMKESPSGPKRKYYTLTED
GEDALDEFMDRWEAMQSSVERLLEGKGRRR

Sequences:

>Translated_110_residues
MSTSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFIKSVMKESPSGPKRKYYTLTED
GEDALDEFMDRWEAMQSSVERLLEGKGRRR
>Mature_109_residues
STSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFIKSVMKESPSGPKRKYYTLTEDG
EDALDEFMDRWEAMQSSVERLLEGKGRRR

Specific function: Unknown

COG id: COG1695

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005149
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03551 PadR [H]

EC number: NA

Molecular weight: Translated: 12549; Mature: 12417

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFIK
CCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHH
SVMKESPSGPKRKYYTLTEDGEDALDEFMDRWEAMQSSVERLLEGKGRRR
HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STSQMLKGILEGCLLAIISEGEIYGYEMSEKLAKYGFTMASEGSIYPLLIRMQKEGFIK
CHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHH
SVMKESPSGPKRKYYTLTEDGEDALDEFMDRWEAMQSSVERLLEGKGRRR
HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]